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view test-data/test-constellations/definitions/cP.1.json @ 0:5e8505f27681 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
author iuc
date Tue, 08 Aug 2023 15:11:47 +0000
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{
    "label": "Gamma (P.1-like)",
    "description": "Defining constellation for lineage P.1",
    "sources": [
        "https://virological.org/t/586",
        "https://cov-lineages.org/global_report_P.1.html"
    ],
    "type": "variant",
    "variant": {
        "Pango_lineages": [
            "P.1"
        ],
	    "mrca_lineage": "P.1",
        "PHE_label": "VOC-21JAN-02",
        "WHO_label": "Gamma",
        "representative_genome": ""
    },
    "tags": [
        "P.1",
        "VOC-21JAN-02",
        "VOC202101/02"
    ],
    "sites": [
        "nuc:T733C",
        "nuc:C2749T",
        "ORF1ab:S1188L",
        "ORF1ab:K1795Q",
        "del:11287:9",
        "nuc:C12778T",
        "nuc:C13860T",
        "S:T20N",
        "S:P26S",
        "S:K417T",
        "S:E484K",
        "S:N501Y",
        "S:T1027I",
        "ORF8:E92K",
        "nuc:28262+AACA",
        "N:P80R"
    ],
    "rules": {
        "min_alt": 8,
        "max_ref": 3
    }
}