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comparison test-data/test-constellations/definitions/cP.1.json @ 0:5e8505f27681 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
author iuc
date Tue, 08 Aug 2023 15:11:47 +0000
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1 {
2 "label": "Gamma (P.1-like)",
3 "description": "Defining constellation for lineage P.1",
4 "sources": [
5 "https://virological.org/t/586",
6 "https://cov-lineages.org/global_report_P.1.html"
7 ],
8 "type": "variant",
9 "variant": {
10 "Pango_lineages": [
11 "P.1"
12 ],
13 "mrca_lineage": "P.1",
14 "PHE_label": "VOC-21JAN-02",
15 "WHO_label": "Gamma",
16 "representative_genome": ""
17 },
18 "tags": [
19 "P.1",
20 "VOC-21JAN-02",
21 "VOC202101/02"
22 ],
23 "sites": [
24 "nuc:T733C",
25 "nuc:C2749T",
26 "ORF1ab:S1188L",
27 "ORF1ab:K1795Q",
28 "del:11287:9",
29 "nuc:C12778T",
30 "nuc:C13860T",
31 "S:T20N",
32 "S:P26S",
33 "S:K417T",
34 "S:E484K",
35 "S:N501Y",
36 "S:T1027I",
37 "ORF8:E92K",
38 "nuc:28262+AACA",
39 "N:P80R"
40 ],
41 "rules": {
42 "min_alt": 8,
43 "max_ref": 3
44 }
45 }