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diff test-data/test-constellations/definitions/cAY.4.json @ 0:5e8505f27681 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
author iuc
date Tue, 08 Aug 2023 15:11:47 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test-constellations/definitions/cAY.4.json	Tue Aug 08 15:11:47 2023 +0000
@@ -0,0 +1,54 @@
+{
+    "label": "Delta (AY.4-like)",
+    "description": "AY.4 lineage defining mutations",
+    "sources": [
+    ],
+    "type": "variant",
+    "variant": {
+	"Pango_lineages": [
+	    "AY.4"
+	],
+	"mrca_lineage": "AY.4",
+        "lineage_name": "AY.4",
+        "parent_lineage": "B.1.617.2",
+        "incompatible_lineage_calls": [
+            "AY.4.2"
+        ],
+	"representative_genome": ""
+    },
+    "tags": [
+	"AY.4"
+    ],
+    "sites": [
+        "del:28271:1",
+        "del:22029:6",
+        "del:28248:6",
+        "orf1a:A1306S",
+        "orf1a:P2046L",
+        "orf1a:P2287S",
+        "orf1a:A2529V",
+        "nuc:C8986T",
+        "orf1a:V2930L",
+        "orf1a:T3255I",
+        "orf1a:T3646A",
+        "nuc:A11332G",
+        "orf1b:P314L",
+        "orf1b:G662S",
+        "orf1b:P1000L",
+        "orf1b:A1918V",
+        "nuc:C27874T",
+        "n:G215C",
+        "nuc:G29742T"
+    ],
+    "intermediate": [
+        "nuc:G210T:0.961862",
+        "nuc:C241T:0.972018",
+        "nuc:T17040C:0.468120",
+        "spike:T95I:0.967111"
+    ],
+    "rules": {
+        "min_alt": 12,
+        "max_ref": 3,
+        "orf1a:A2529V": "alt"
+    }
+}