Mercurial > repos > iuc > lineagespot
comparison test-data/test-constellations/definitions/cAY.4.json @ 0:5e8505f27681 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
| author | iuc |
|---|---|
| date | Tue, 08 Aug 2023 15:11:47 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:5e8505f27681 |
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| 1 { | |
| 2 "label": "Delta (AY.4-like)", | |
| 3 "description": "AY.4 lineage defining mutations", | |
| 4 "sources": [ | |
| 5 ], | |
| 6 "type": "variant", | |
| 7 "variant": { | |
| 8 "Pango_lineages": [ | |
| 9 "AY.4" | |
| 10 ], | |
| 11 "mrca_lineage": "AY.4", | |
| 12 "lineage_name": "AY.4", | |
| 13 "parent_lineage": "B.1.617.2", | |
| 14 "incompatible_lineage_calls": [ | |
| 15 "AY.4.2" | |
| 16 ], | |
| 17 "representative_genome": "" | |
| 18 }, | |
| 19 "tags": [ | |
| 20 "AY.4" | |
| 21 ], | |
| 22 "sites": [ | |
| 23 "del:28271:1", | |
| 24 "del:22029:6", | |
| 25 "del:28248:6", | |
| 26 "orf1a:A1306S", | |
| 27 "orf1a:P2046L", | |
| 28 "orf1a:P2287S", | |
| 29 "orf1a:A2529V", | |
| 30 "nuc:C8986T", | |
| 31 "orf1a:V2930L", | |
| 32 "orf1a:T3255I", | |
| 33 "orf1a:T3646A", | |
| 34 "nuc:A11332G", | |
| 35 "orf1b:P314L", | |
| 36 "orf1b:G662S", | |
| 37 "orf1b:P1000L", | |
| 38 "orf1b:A1918V", | |
| 39 "nuc:C27874T", | |
| 40 "n:G215C", | |
| 41 "nuc:G29742T" | |
| 42 ], | |
| 43 "intermediate": [ | |
| 44 "nuc:G210T:0.961862", | |
| 45 "nuc:C241T:0.972018", | |
| 46 "nuc:T17040C:0.468120", | |
| 47 "spike:T95I:0.967111" | |
| 48 ], | |
| 49 "rules": { | |
| 50 "min_alt": 12, | |
| 51 "max_ref": 3, | |
| 52 "orf1a:A2529V": "alt" | |
| 53 } | |
| 54 } |