Mercurial > repos > iuc > jbrowse

comparison test-data/bw/test.xml @ 40:d5e8d72c432a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 7be399c9ee10ecd4b076cc1df775f585c3eb0eeb
author iuc
date Wed, 01 Mar 2017 23:06:18 -0500
parents 318a0aa5075a
children c1451868f8d4
comparison
equal deleted inserted replaced
39:e62d1a610b2c 40:d5e8d72c432a
3 <metadata> 3 <metadata>
4 <gencode>11</gencode> 4 <gencode>11</gencode>
5 <genomes> 5 <genomes>
6 <genome>test-data/merlin.fa</genome> 6 <genome>test-data/merlin.fa</genome>
7 </genomes> 7 </genomes>
8 <general>
9 <defaultLocation></defaultLocation>
10 <trackPadding>40</trackPadding>
11 <shareLink>true</shareLink>
12 <aboutDescription></aboutDescription>
13 <show_tracklist>true</show_tracklist>
14 <show_nav>true</show_nav>
15 <show_overview>false</show_overview>
16 <show_menu>true</show_menu>
17 <hideGenomeOptions>false</hideGenomeOptions>
18 </general>
8 </metadata> 19 </metadata>
9 <tracks> 20 <tracks>
10 <track cat="Scaling" format="wiggle"> 21 <track cat="Scaling" format="wiggle">
11 <files> 22 <files>
12 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto Global"/> 23 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto Global"/>
18 <variance_band>true</variance_band> 29 <variance_band>true</variance_band>
19 <autoscale>global</autoscale> 30 <autoscale>global</autoscale>
20 <color_pos>__auto__</color_pos> 31 <color_pos>__auto__</color_pos>
21 <color_neg>__auto__</color_neg> 32 <color_neg>__auto__</color_neg>
22 <bicolor_pivot>zero</bicolor_pivot> 33 <bicolor_pivot>zero</bicolor_pivot>
34 <scale>linear</scale>
23 </wiggle> 35 </wiggle>
24 </options> 36 </options>
25 </track> 37 </track>
26 <track cat="Scaling" format="wiggle"> 38 <track cat="Scaling" format="wiggle">
27 <files> 39 <files>
34 <variance_band>true</variance_band> 46 <variance_band>true</variance_band>
35 <autoscale>local</autoscale> 47 <autoscale>local</autoscale>
36 <color_pos>__auto__</color_pos> 48 <color_pos>__auto__</color_pos>
37 <color_neg>__auto__</color_neg> 49 <color_neg>__auto__</color_neg>
38 <bicolor_pivot>zero</bicolor_pivot> 50 <bicolor_pivot>zero</bicolor_pivot>
51 <scale>linear</scale>
39 </wiggle> 52 </wiggle>
40 </options> 53 </options>
41 </track> 54 </track>
42 <track cat="Scaling" format="wiggle"> 55 <track cat="Scaling" format="wiggle">
43 <files> 56 <files>
52 <min>20</min> 65 <min>20</min>
53 <max>60</max> 66 <max>60</max>
54 <color_pos>__auto__</color_pos> 67 <color_pos>__auto__</color_pos>
55 <color_neg>__auto__</color_neg> 68 <color_neg>__auto__</color_neg>
56 <bicolor_pivot>zero</bicolor_pivot> 69 <bicolor_pivot>zero</bicolor_pivot>
70 <scale>linear</scale>
57 </wiggle> 71 </wiggle>
58 </options> 72 </options>
59 </track> 73 </track>
60 74
61 75
72 <autoscale>local</autoscale> 86 <autoscale>local</autoscale>
73 87
74 <color_pos>__auto__</color_pos> 88 <color_pos>__auto__</color_pos>
75 <color_neg>__auto__</color_neg> 89 <color_neg>__auto__</color_neg>
76 <bicolor_pivot>mean</bicolor_pivot> 90 <bicolor_pivot>mean</bicolor_pivot>
91 <scale>linear</scale>
77 </wiggle> 92 </wiggle>
78 </options> 93 </options>
79 </track> 94 </track>
80 <track cat="Colouring" format="wiggle"> 95 <track cat="Colouring" format="wiggle">
81 <files> 96 <files>
89 <autoscale>local</autoscale> 104 <autoscale>local</autoscale>
90 105
91 <color_pos>#0000ff</color_pos> 106 <color_pos>#0000ff</color_pos>
92 <color_neg>#ff0000</color_neg> 107 <color_neg>#ff0000</color_neg>
93 <bicolor_pivot>mean</bicolor_pivot> 108 <bicolor_pivot>mean</bicolor_pivot>
109 <scale>linear</scale>
94 </wiggle> 110 </wiggle>
95 </options> 111 </options>
96 </track> 112 </track>
97 <track cat="Colouring" format="wiggle"> 113 <track cat="Colouring" format="wiggle">
98 <files> 114 <files>
106 <autoscale>local</autoscale> 122 <autoscale>local</autoscale>
107 123
108 <color_pos>#ff0000</color_pos> 124 <color_pos>#ff0000</color_pos>
109 <color_neg>#0000ff</color_neg> 125 <color_neg>#0000ff</color_neg>
110 <bicolor_pivot>mean</bicolor_pivot> 126 <bicolor_pivot>mean</bicolor_pivot>
127 <scale>log</scale>
111 </wiggle> 128 </wiggle>
112 </options> 129 </options>
113 </track> 130 </track>
114 <track cat="Colouring" format="wiggle"> 131 <track cat="Colouring" format="wiggle">
115 <files> 132 <files>
123 <autoscale>local</autoscale> 140 <autoscale>local</autoscale>
124 141
125 <color_pos>#0000ff</color_pos> 142 <color_pos>#0000ff</color_pos>
126 <color_neg>#ff0000</color_neg> 143 <color_neg>#ff0000</color_neg>
127 <bicolor_pivot>100</bicolor_pivot> 144 <bicolor_pivot>100</bicolor_pivot>
145 <scale>linear</scale>
128 </wiggle> 146 </wiggle>
129 </options> 147 </options>
130 </track> 148 </track>
131 </tracks> 149 </tracks>
132 </root> 150 </root>