Mercurial > repos > iuc > interval2maf
changeset 3:86765a767abd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 9f522562ca2048b8bafa3404abf3f930f72f7f05
| author | iuc |
|---|---|
| date | Wed, 09 Nov 2022 12:34:16 +0000 |
| parents | 2bb222cdbdea |
| children | 5c9d58cfb8ae |
| files | interval2maf.py interval2maf.xml macros.xml test-data/interval2maf-in.bed test-data/interval2maf-out1.maf test-data/interval2maf-out2.maf test-data/interval2maf-out3.maf |
| diffstat | 7 files changed, 9025 insertions(+), 23180 deletions(-) [+] |
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--- a/interval2maf.py Tue Aug 31 09:06:20 2021 +0000 +++ b/interval2maf.py Wed Nov 09 12:34:16 2022 +0000 @@ -31,7 +31,7 @@ import bx.align.maf import bx.intervals.io from bx.cookbook import doc_optparse -from galaxy.tools.util import maf_utilities +from galaxy.datatypes.util import maf_utilities def __main__():
--- a/interval2maf.xml Tue Aug 31 09:06:20 2021 +0000 +++ b/interval2maf.xml Wed Nov 09 12:34:16 2022 +0000 @@ -1,14 +1,12 @@ -<tool id="Interval2Maf1" name="Extract MAF blocks" version="1.0.1+galaxy0"> +<tool id="Interval2Maf1" name="Extract MAF blocks" version="1.0.1+galaxy1" profile="21.05"> <description>given a set of genomic intervals</description> + <macros> + <import>macros.xml</import> + </macros> <xrefs> <xref type="bio.tools">bx-python</xref> </xrefs> - <macros> - <import>macros.xml</import> - </macros> - <requirements> - <expand macro="requirements" /> - </requirements> + <expand macro="requirements" /> <command> <