Mercurial > repos > iuc > interval2maf

diff interval2maf.xml @ 3:86765a767abd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 9f522562ca2048b8bafa3404abf3f930f72f7f05
author iuc
date Wed, 09 Nov 2022 12:34:16 +0000
parents 2bb222cdbdea
children
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--- a/interval2maf.xml	Tue Aug 31 09:06:20 2021 +0000
+++ b/interval2maf.xml	Wed Nov 09 12:34:16 2022 +0000
@@ -1,14 +1,12 @@
-<tool id="Interval2Maf1" name="Extract MAF blocks" version="1.0.1+galaxy0">
+<tool id="Interval2Maf1" name="Extract MAF blocks" version="1.0.1+galaxy1" profile="21.05">
     <description>given a set of genomic intervals</description>
+    <macros>
+            <import>macros.xml</import>
+    </macros>
     <xrefs>
         <xref type="bio.tools">bx-python</xref>
     </xrefs>
-    <macros>
-            <import>macros.xml</import>
-    </macros>
-    <requirements>
-        <expand macro="requirements" />
-    </requirements>
+    <expand macro="requirements" />
     <command>
     <![CDATA[
     #if $maf_source_type.maf_source == "cached"
@@ -82,7 +80,7 @@
     </outputs>
     <tests>
         <test>
-            <param name="input1" dbkey="hg38" value="interval2maf-in1.bed" />
+            <param name="input1" dbkey="hg38" value="interval2maf-in.bed" />
             <param name="maf_source" value="user" />
             <param name="mafFile" dbkey="hg38" value="interval2maf-in1.maf" />
             <param name="species" value="hg38,mm10,eulFla1" />
@@ -90,7 +88,7 @@
             <output name="out_file1" file="interval2maf-out1.maf" />
         </test>
          <test>
-            <param name="input1" dbkey="hg38" value="interval2maf-in2.bed"/>
+            <param name="input1" dbkey="hg38" value="interval2maf-in.bed"/>
             <param name="maf_source" value="cached"/>
             <param name="mafType" value="TEST"/>
             <param name="species" value="hg38,mm10,eulFla1" />
@@ -98,7 +96,7 @@
             <output name="out_file1" file="interval2maf-out2.maf" />
         </test>
         <test>
-            <param name="input1" dbkey="hg38" value="interval2maf-in3.bed"/>
+            <param name="input1" dbkey="hg38" value="interval2maf-in.bed"/>
             <param name="maf_source" value="cached"/>
             <param name="mafType" value="TEST"/>
             <param name="species" value="hg38,mm10,eulFla1" />