Mercurial > repos > iuc > interval2maf

annotate macros.xml @ 1:68c6983e47d2 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 95632be9aca24769ac192f2eb6a0454af21eff9e"
author iuc
date Tue, 10 Nov 2020 18:47:15 +0000
parents dc537f6496bd
children 86765a767abd
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dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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1 <macros>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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2 <xml name="requirements">
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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3 <requirement type="package" version="0.8.9">bx-python</requirement>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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4 <yield />
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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5 </xml>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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6 <xml name="citations">
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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7 <citations>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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8 <citation type="doi">10.1093/bioinformatics/btr398</citation>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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9 </citations>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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10 </xml>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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11 <xml name="maf_source">
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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12 <when value="cached">
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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13 <param name="mafType" type="select" label="Choose alignments">
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68c6983e47d2 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 95632be9aca24769ac192f2eb6a0454af21eff9e"
iuc
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14 <options from_data_table="maf_indexes" />
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dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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15 </param>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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16 <param name="species" type="select" display="checkboxes" multiple="true" label="Choose species" help="Select species to be included in the final alignment">
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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17 <options from_data_table="maf_indexes">
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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18 <column name="value" index="3"/>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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19 <filter type="multiple_splitter" column="3" separator=","/>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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20 </options>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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21 </param>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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22 </when>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
iuc
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23 </xml>
dc537f6496bd "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
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24 </macros>