Mercurial > repos > iuc > integron_finder

annotate test-data/test9_integrons_table.tsv @ 2:9fdd3e97db8d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/integron_finder commit 13f722da1a2d95586490e8534b9884abe61ba7cd
author iuc
date Tue, 10 Feb 2026 15:53:43 +0000
parents 2729629d81db
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9fdd3e97db8d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/integron_finder commit 13f722da1a2d95586490e8534b9884abe61ba7cd
iuc
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1 # integron_finder 2.0.5
9fdd3e97db8d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/integron_finder commit 13f722da1a2d95586490e8534b9884abe61ba7cd
iuc
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2 # cmd: integron_finder /tmp/tmphy8ici_1/files/5/e/e/dataset_5eeb02f0-3703-48bc-a3a4-d7b4b476cf46.dat --cpu 1 --keep-tmp -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40 --no-proteins
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2729629d81db planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
iuc
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diff changeset
3 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology
2729629d81db planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
iuc
parents:
diff changeset
4 integron_01 ACBA.007.P01_13 attc_001 17825 17884 -1 1e-09 attC attC attc_4 CALIN Yes NA circ
2729629d81db planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
iuc
parents:
diff changeset
5 integron_01 ACBA.007.P01_13 attc_002 19080 19149 -1 0.0001 attC attC attc_4 CALIN Yes 1196.0 circ
2729629d81db planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
iuc
parents:
diff changeset
6 integron_01 ACBA.007.P01_13 attc_003 19618 19726 -1 1.1e-07 attC attC attc_4 CALIN Yes 469.0 circ