Mercurial > repos > iuc > integron_finder

annotate test-data/test4_integrons_table.tsv @ 2:9fdd3e97db8d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/integron_finder commit 13f722da1a2d95586490e8534b9884abe61ba7cd
author iuc
date Tue, 10 Feb 2026 15:53:43 +0000
parents 2729629d81db
children
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9fdd3e97db8d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/integron_finder commit 13f722da1a2d95586490e8534b9884abe61ba7cd
iuc
parents: 0
diff changeset
1 # integron_finder 2.0.5
9fdd3e97db8d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/integron_finder commit 13f722da1a2d95586490e8534b9884abe61ba7cd
iuc
parents: 0
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2 # cmd: integron_finder /tmp/tmphy8ici_1/files/e/0/d/dataset_e0daeffa-7968-4ff7-babf-1f3f24a5c8f3.dat --cpu 1 --keep-tmp --topology-file /tmp/tmphy8ici_1/files/0/b/f/dataset_0bfb6d07-f1e7-4e45-ac12-719cf99e8532.dat -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
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2729629d81db planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
iuc
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diff changeset
3 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology
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9fdd3e97db8d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/integron_finder commit 13f722da1a2d95586490e8534b9884abe61ba7cd
iuc
parents: 0
diff changeset
4 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9e-25 protein intI intersection_tyr_intI In0 Yes NA lin
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2729629d81db planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
iuc
parents:
diff changeset
5 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_20 17375 17722 -1 NA protein protein NA CALIN Yes NA lin
2729629d81db planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
iuc
parents:
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6 integron_02 ACBA.007.P01_13 attc_001 17825 17884 -1 1e-09 attC attC attc_4 CALIN Yes NA lin
2729629d81db planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
iuc
parents:
diff changeset
7 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_21 17886 18665 -1 NA protein protein NA CALIN Yes NA lin
2729629d81db planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
iuc
parents:
diff changeset
8 integron_02 ACBA.007.P01_13 attc_002 19080 19149 -1 0.0001 attC attC attc_4 CALIN Yes 1196.0 lin
2729629d81db planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
iuc
parents:
diff changeset
9 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_22 19090 19749 -1 NA protein protein NA CALIN Yes NA lin
2729629d81db planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
iuc
parents:
diff changeset
10 integron_02 ACBA.007.P01_13 attc_003 19618 19726 -1 1.1e-07 attC attC attc_4 CALIN Yes 469.0 lin
2729629d81db planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
iuc
parents:
diff changeset
11 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_23 19721 20254 -1 NA protein protein NA CALIN Yes NA lin