diff test-data/gene_order.tabular @ 0:13d74ecaab08 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/infercnv commit 7e7abdef47fdf68f3ca69b75a8477dabc7bfa965
author iuc
date Tue, 23 Jul 2024 15:42:52 +0000
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gene_order.tabular	Tue Jul 23 15:42:52 2024 +0000
@@ -0,0 +1,395 @@
+WASH7P	chr1	14404	29570
+LINC00115	chr1	826206	827522
+NOC2L	chr1	944204	959309
+MIR200A	chr1	1167863	1167952
+SDF4	chr1	1216908	1232031
+UBE2J2	chr1	1253909	1273885
+SCNN1D	chr1	1280436	1292029
+ACAP3	chr1	1292376	1309609
+PUSL1	chr1	1308567	1311677
+AURKAIP1	chr1	1373730	1375495
+CCNL2	chr1	1385711	1399328
+MRPL20	chr1	1401908	1407313
+ANKRD65	chr1	1418420	1421769
+ATAD3B	chr1	1471769	1497848
+SSU72	chr1	1541673	1574869
+MMP23B	chr1	1632095	1635263
+SLC35E2B	chr1	1659529	1692728
+SLC35E2	chr1	1724838	1745992
+GNB1	chr1	1785285	1891117
+GABRD	chr1	2019298	2030758
+PRKCZ	chr1	2050470	2185395
+RER1	chr1	2391775	2405444
+PEX10	chr1	2403964	2413797
+PANK4	chr1	2508533	2526628
+TNFRSF14	chr1	2555639	2565382
+FAM213B	chr1	2586491	2591469
+WRAP73	chr1	3630767	3652761
+LRRC47	chr1	3778558	3796504
+DFFB	chr1	3857267	3885429
+C1orf174	chr1	3889125	3900293
+MIR4417	chr1	5564071	5564143
+RPL22	chr1	6181269	6209389
+ICMT	chr1	6221193	6235972
+ACOT7	chr1	6264269	6394391
+NOL9	chr1	6521347	6554535
+KLHL21	chr1	6590724	6614607
+PHF13	chr1	6613685	6624033
+THAP3	chr1	6624866	6635586
+DNAJC11	chr1	6634168	6701924
+CAMTA1	chr1	6785324	7769706
+VAMP3	chr1	7771269	7781432
+PARK7	chr1	7954291	7985505
+ERRFI1	chr1	8004404	8026308
+SLC45A1	chr1	8317826	8344167
+RERE	chr1	8352397	8817643
+ENO1	chr1	8861002	8879249
+SLC2A5	chr1	9035107	9088478
+SPSB1	chr1	9292880	9369532
+CLSTN1	chr1	9729026	9824526
+LZIC	chr1	9922113	9943407
+NMNAT1	chr1	9943428	9985501
+UBE4B	chr1	10032832	10181239
+KIF1B	chr1	10210805	10381603
+PGD	chr1	10398592	10420144
+DFFA	chr1	10456522	10472526
+TARDBP	chr1	11012344	11026420
+SRM	chr1	11054584	11060024
+EXOSC10	chr1	11066618	11099881
+MTOR	chr1	11106535	11262507
+UBIAD1	chr1	11273206	11296049
+FBXO44	chr1	11654375	11663327
+FBXO6	chr1	11664124	11674354
+MAD2L2	chr1	11674480	11691650
+AGTRAP	chr1	11736084	11754802
+CLCN6	chr1	11806096	11843144
+NPPA	chr1	11845709	11848345
+RNU5E-1	chr1	11908152	11908271
+PLOD1	chr1	11934205	11975538
+MFN2	chr1	11980181	12013514
+MIIP	chr1	12019466	12032045
+TNFRSF1B	chr1	12167003	12209228
+SNORA70	chr1	12221148	12221271
+DHRS3	chr1	12567910	12617731
+PRAMEF10	chr1	12892896	12898270
+PDPN	chr1	13583465	13617957
+PRDM2	chr1	13700198	13825079
+KAZN	chr1	13892792	15118043
+CASP9	chr1	15490832	15526534
+DNAJC16	chr1	15526813	15592379
+FBLIM1	chr1	15756607	15786594
+SPEN	chr1	15847864	15940460
+ZBTB17	chr1	15941869	15976132
+FBXO42	chr1	16246839	16352454
+SZRD1	chr1	16352575	16398145
+NECAP2	chr1	16440672	16460078
+NBPF1	chr1	16562319	16613562
+CROCCP2	chr1	16618253	16657232
+MIR3675	chr1	16858949	16859021
+SDHB	chr1	17018722	17054170
+PADI2	chr1	17066761	17119435
+RCC2	chr1	17406760	17439724
+ARHGEF10L	chr1	17539835	17697874
+IGSF21	chr1	18107746	18378483
+UBR4	chr1	19074506	19210276
+EMC1	chr1	19215664	19251552
+MRTO4	chr1	19251539	19260128
+AKR7A2	chr1	19303965	19312146
+PQLC2	chr1	19312326	19329300
+CAPZB	chr1	19338776	19485539
+MINOS1	chr1	19596977	19629821
+TMCO4	chr1	19682213	19799945
+VWA5B1	chr1	20290919	20354894
+CAMK2N1	chr1	20482391	20486220
+MUL1	chr1	20499448	20508161
+DDOST	chr1	20651767	20661544
+HP1BP3	chr1	20742661	20787323
+EIF4G3	chr1	20806292	21176888
+RAP1GAP	chr1	21596215	21669363
+USP48	chr1	21678298	21783606
+CELA3A	chr1	22001656	22012539
+LINC00339	chr1	22024558	22031223
+CDC42	chr1	22052627	22092946
+C1QA	chr1	22636506	22639608
+C1QC	chr1	22643630	22648110
+C1QB	chr1	22652762	22661538
+MIR4684	chr1	22719517	22719598
+HNRNPR	chr1	23303771	23344336
+ZNF436	chr1	23359448	23369442
+ASAP3	chr1	23428563	23484568
+ID3	chr1	23557918	23559794
+RPL11	chr1	23691779	23696425
+PITHD1	chr1	23778405	23788232
+LYPLA2	chr1	23790970	23795539
+GALE	chr1	23795599	23800804
+HMGCL	chr1	23801885	23838620
+FUCA1	chr1	23845077	23868294
+PNRC2	chr1	23959109	23963462
+SRSF10	chr1	23964804	23980927
+NIPAL3	chr1	24415794	24472976
+SRRM1	chr1	24631716	24673267
+CLIC4	chr1	24745357	24844324
+SYF2	chr1	25222679	25232502
+TMEM50A	chr1	25337917	25362361
+RHCE	chr1	25362249	25430192
+MTFR1L	chr1	25818640	25832942
+STMN1	chr1	25884181	25906991
+PAFAH2	chr1	25959767	25998157
+SCARNA17	chr1	26006006	26006130
+PDIK1L	chr1	26111165	26125543
+ZNF593	chr1	26169871	26170873
+CATSPER4	chr1	26190561	26202968
+SH3BGRL3	chr1	26279176	26281522
+DHDDS	chr1	26432282	26471294
+HMGN2	chr1	26472450	26475972
+RPS6KA1	chr1	26529761	26575030
+ARID1A	chr1	26693236	26782104
+PIGV	chr1	26787472	26798398
+GPN2	chr1	26876133	26890297
+GPATCH3	chr1	26890488	26900466
+NUDC	chr1	26900238	26946862
+TMEM222	chr1	27322145	27336400
+GPR3	chr1	27392644	27395814
+WASF2	chr1	27404226	27490158
+IFI6	chr1	27666061	27672218
+FAM76A	chr1	27725979	27763122
+STX12	chr1	27773183	27824452
+THEMIS2	chr1	27872543	27886685
+RPA2	chr1	27891524	27914746
+EYA3	chr1	27970344	28088696
+PTAFR	chr1	28147166	28193936
+DNAJC8	chr1	28199456	28233025
+ATPIF1	chr1	28236109	28246906
+SESN2	chr1	28259527	28282491
+MED18	chr1	28329002	28335967
+PHACTR4	chr1	28369582	28500369
+RCC1	chr1	28505943	28539300
+SNHG3	chr1	28505980	28510892
+TRNAU1AP	chr1	28553085	28578545
+SNHG12	chr1	28578538	28582983
+TAF12	chr1	28589323	28643085
+RAB42	chr1	28592200	28595443
+GMEB1	chr1	28668732	28719353
+YTHDF2	chr1	28736621	28769775
+OPRD1	chr1	28812142	28871267
+SRSF4	chr1	29147743	29181987
+MECR	chr1	29192873	29230942
+LAPTM5	chr1	30732469	30757820
+SDC3	chr1	30869467	30908761
+PUM1	chr1	30931506	31065991
+SNRNP40	chr1	31259568	31296782
+ZCCHC17	chr1	31296982	31364953
+TINAGL1	chr1	31576485	31587686
+PEF1	chr1	31629862	31644896
+COL16A1	chr1	31652247	31704319
+PTP4A2	chr1	31906421	31944856
+KHDRBS1	chr1	32013829	32060850
+TMEM39B	chr1	32072031	32102866
+KPNA6	chr1	32108038	32176568
+TXLNA	chr1	32179686	32198285
+CCDC28B	chr1	32200386	32205387
+TMEM234	chr1	32214472	32222359
+EIF3I	chr1	32221928	32231604
+MTMR9LP	chr1	32231658	32241620
+HDAC1	chr1	32292086	32333635
+MARCKSL1	chr1	32333832	32336379
+BSDC1	chr1	32365103	32394731
+ZBTB8A	chr1	32539427	32605939
+ZBTB8OS	chr1	32600172	32650903
+RBBP4	chr1	32651142	32686211
+KIAA1522	chr1	32741885	32774970
+YARS	chr1	32775237	32818153
+S100PBP	chr1	32816767	32858879
+AK2	chr1	33007940	33080996
+ZNF362	chr1	33256545	33300719
+PHC2	chr1	33323623	33431052
+SMIM12	chr1	34712737	34859816
+GJB3	chr1	34781189	34786369
+ZMYM1	chr1	35059786	35115859
+SFPQ	chr1	35176378	35193148
+ZMYM4	chr1	35268967	35422058
+KIAA0319L	chr1	35433490	35557950
+NCDN	chr1	35557473	35567274
+PSMB2	chr1	35599544	35641844
+C1orf216	chr1	35713875	35719472
+AGO3	chr1	35930718	36072500
+ADPRHL2	chr1	36088875	36093932
+COL8A2	chr1	36095236	36125220
+TRAPPC3	chr1	36136570	36156053
+THRAP3	chr1	36224416	36305357
+LSM10	chr1	36391238	36397892
+MRPS15	chr1	36455718	36464437
+CSF3R	chr1	36466043	36483278
+GRIK3	chr1	36795527	37034129
+MEAF6	chr1	37492575	37514774
+SNIP1	chr1	37534449	37554344
+GNL2	chr1	37566816	37595935
+C1orf109	chr1	37681570	37692249
+MANEAL	chr1	37793802	37801137
+C1orf122	chr1	37806979	37809454
+INPP5B	chr1	37860697	37947057
+SNORA63	chr1	37884237	37884317
+SF3A3	chr1	37956975	37990921
+FHL3	chr1	37996770	38005606
+RRAGC	chr1	38838198	38859823
+AKIRIN1	chr1	38991223	39006059
+NDUFS5	chr1	39026318	39034636
+MACF1	chr1	39081316	39487177
+PPIEL	chr1	39531838	39558707
+PABPC4	chr1	39560816	39576790
+PPIE	chr1	39692182	39763914
+BMP8B	chr1	39757182	39788861
+TRIT1	chr1	39841022	39883511
+CAP1	chr1	40040233	40072649
+PPT1	chr1	40071461	40097727
+RLF	chr1	40161373	40240921
+ZMPSTE24	chr1	40258107	40294184
+COL9A2	chr1	40300487	40317816
+SMAP2	chr1	40344850	40423326
+NFYC	chr1	40691648	40771603
+CITED4	chr1	40861051	40862366
+CTPS1	chr1	40979335	41012565
+SCMH1	chr1	41027200	41242154
+FOXJ3	chr1	42176539	42335877
+ZMYND12	chr1	42430329	42456267
+PPIH	chr1	42658425	42676758
+YBX1	chr1	42682427	42702349
+C1orf50	chr1	42767269	42775747
+ZNF691	chr1	42846573	42852477
+SLC2A1	chr1	42925375	42959173
+EBNA1BP2	chr1	43164175	43270936
+TMEM125	chr1	43269994	43274002
+CDC20	chr1	43358955	43363203
+ELOVL1	chr1	43363397	43368074
+MED8	chr1	43383917	43389808
+SZT2	chr1	43389882	43454247
+HYI	chr1	43451003	43453989
+KDM4A	chr1	43650158	43705515
+IPO13	chr1	43946939	43968022
+DPH2	chr1	43970000	43973369
+ATP6V0B	chr1	43974487	43978295
+SLC6A9	chr1	43991500	44031467
+DMAP1	chr1	44213455	44220681
+ERI3	chr1	44221070	44355260
+RNF220	chr1	44405194	44651724
+MIR5584	chr1	44545493	44545552
+TMEM53	chr1	44635238	44674555
+RPS8	chr1	44775251	44778779
+SNORD38B	chr1	44778390	44778458
+PLK3	chr1	44800225	44805990
+EIF2B3	chr1	44850522	44986722
+HECTD3	chr1	45002540	45011329
+UROD	chr1	45012147	45015575
+HPDL	chr1	45326905	45328533
+MUTYH	chr1	45329163	45340470
+TOE1	chr1	45339670	45343975
+PRDX1	chr1	45511036	45523047
+AKR1A1	chr1	45550543	45570049
+NASP	chr1	45583846	45618904
+GPBP1L1	chr1	45627304	45688113
+TMEM69	chr1	45687214	45694443
+IPP	chr1	45694324	45750650
+PIK3R3	chr1	46040140	46133036
+POMGNT1	chr1	46188682	46220305
+LRRC41	chr1	46261196	46303608
+UQCRH	chr1	46303631	46316776
+NSUN4	chr1	46340177	46365152
+FAAH	chr1	46394265	46413848
+MKNK1	chr1	46557408	46616843
+ATPAF1	chr1	46632737	46673867
+EFCAB14	chr1	46675159	46719064
+PDZK1IP1	chr1	47183593	47191044
+CMPK1	chr1	47333797	47378839
+SPATA6	chr1	48295372	48472208
+BEND5	chr1	48727523	48776969
+ELAVL4	chr1	50048014	50203786
+CDKN2C	chr1	50960745	50974633
+RNF11	chr1	51236271	51273455
+EPS15	chr1	51354263	51519328
+OSBPL9	chr1	51577179	51798427
+TXNDC12	chr1	52020131	52056171
+KTI12	chr1	52032103	52033816
+BTF3L4	chr1	52056125	52090716
+ZFYVE9	chr1	52142094	52346686
+ORC1	chr1	52372829	52404459
+PRPF38A	chr1	52404564	52420839
+ZCCHC11	chr1	52408282	52553487
+GPX7	chr1	52602372	52609051
+ZYG11B	chr1	52726467	52827342
+SCP2	chr1	52927229	53051703
+MIR5095	chr1	52934930	52935017
+CPT2	chr1	53196429	53214197
+C1orf123	chr1	53214099	53220617
+MAGOH	chr1	53226892	53238610
+LRP8	chr1	53242364	53328070
+YIPF1	chr1	53851719	53889834
+HSPB11	chr1	53916574	53945929
+LRRC42	chr1	53946077	53968168
+TMEM59	chr1	54026681	54053504
+MRPL37	chr1	54184041	54225464
+TTC4	chr1	54715822	54742657
+DHCR24	chr1	54849633	54887218
+TMEM61	chr1	54980792	54992293
+USP24	chr1	55066359	55215113
+DAB1	chr1	56994778	58546734
+OMA1	chr1	58415384	58546802
+JUN	chr1	58780788	58784327
+NFIA	chr1	60865259	61462793
+TM2D1	chr1	61681046	61725423
+USP1	chr1	62436297	62451804
+ATG4C	chr1	62784135	62865513
+FOXD3	chr1	63323041	63325126
+ALG6	chr1	63367590	63438562
+ITGB3BP	chr1	63440770	63593721
+EFCAB7	chr1	63523372	63572693
+PGM1	chr1	63593276	63660245
+RAVER2	chr1	64745095	64833232
+JAK1	chr1	64833229	64966504
+AK4	chr1	65147549	65232145
+DNAJC6	chr1	65248219	65415869
+LEPROT	chr1	65420587	65436007
+PDE4B	chr1	65792514	66374579
+MIR3117	chr1	66628440	66628517
+MIER1	chr1	66924895	66988619
+SERBP1	chr1	67407810	67430415
+GADD45A	chr1	67685061	67688338
+WLS	chr1	68098473	68233120
+LRRC40	chr1	70144805	70205620
+SRSF11	chr1	70205682	70253052
+ANKRD13C	chr1	70260588	70354734
+HHLA3	chr1	70354805	70385339
+CTH	chr1	70411218	70439851
+ZRANB2	chr1	71063291	71081297
+NEGR1	chr1	71395940	72282734
+CRYZ	chr1	74705482	74733408
+TYW3	chr1	74733152	74766678
+SLC44A5	chr1	75202131	75611116
+ACADM	chr1	75724347	75787575
+RABGGTB	chr1	75786197	75795079
+ST6GALNAC3	chr1	76074719	76634601
+PIGK	chr1	77088990	77219430
+AK5	chr1	77282051	77559969
+ZZZ3	chr1	77562416	77683419
+USP33	chr1	77695987	77759852
+FUBP1	chr1	77944055	77979110
+DNAJB4	chr1	77979175	78017964
+IFI44L	chr1	78619922	78646145
+IFI44	chr1	78649796	78664078
+TTLL7	chr1	83865028	83999150
+PRKACB	chr1	84078062	84238498
+RPF1	chr1	84479259	84497790
+GNG5	chr1	84498325	84506565
+C1orf52	chr1	85249953	85259672
+BCL10	chr1	85266248	85277090
+DDAH1	chr1	85318481	85578363
+ZNHIT6	chr1	85649423	85708433
+ODF2L	chr1	86346824	86396342
+CLCA4	chr1	86547078	86580754
+SH3GLB1	chr1	86704570	86748184
+PKN2	chr1	88684222	88836255
+GTF2B	chr1	88852932	88891944
+RBMXL1	chr1	88979456	88992960
+GBP3	chr1	89006666	89022894
+LRRC8D	chr1	89821014	89936611
+ZNF326	chr1	89995112	90035531
+ZNF644	chr1	90915298	91022272
\ No newline at end of file