view imagej2_create_image_jython_script.py @ 0:de912ce81cb9 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8ea6a4271431c05c82b09c0d3e629b13e6ea7936
author iuc
date Fri, 22 Jul 2016 23:24:33 -0400
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import sys
from ij import IJ

# Fiji Jython interpreter implements Python 2.5 which does not
# provide support for argparse.
title = sys.argv[ -6 ]
width = int( sys.argv[ -5 ] )
height = int( sys.argv[ -4 ] )
depth = int( sys.argv[ -3 ] )
type = sys.argv[ -2 ].replace( '_', ' ' )
tmp_image_path = sys.argv[ -1 ]

imp = IJ.newImage( title, type, width, height, depth )
IJ.save( imp, "%s" % tmp_image_path )