Mercurial > repos > iuc > humann2

changeset 2:a7ff077597bc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 18fea370966f4b87c8180df4afa0f3b138b75908"
author iuc
date Sat, 25 Jan 2020 23:18:24 +0000
parents 2f9de3727c88
children f22f41112336
files humann2.xml repository_dependencies.xml
diffstat 2 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/humann2.xml	Tue Aug 01 07:52:52 2017 -0400
+++ b/humann2.xml	Sat Jan 25 23:18:24 2020 +0000
@@ -236,8 +236,8 @@
             <param name="nucleotide_db_selector" value="history"/>
             <param name="nucleotide_database">
                 <collection type="list">
-                    <element name="g__Bacteroides.s__Bacteroides_stercoris.centroids.v0.1.1" ftype="fasta" value="g__Bacteroides.s__Bacteroides_stercoris.centroids.v0.1.1.ffn.gz" />
-                    <element name="g__Bacteroides.s__Bacteroides_thetaiotaomicron.centroids.v0.1.1" ftype="fasta" value="g__Bacteroides.s__Bacteroides_thetaiotaomicron.centroids.v0.1.1.ffn.gz" />
+                    <element name="g__Bacteroides.s__Bacteroides_stercoris.centroids.v0.1.1" ftype="fasta.gz" value="g__Bacteroides.s__Bacteroides_stercoris.centroids.v0.1.1.ffn.gz" />
+                    <element name="g__Bacteroides.s__Bacteroides_thetaiotaomicron.centroids.v0.1.1" ftype="fasta.gz" value="g__Bacteroides.s__Bacteroides_thetaiotaomicron.centroids.v0.1.1.ffn.gz" />
                 </collection>
             </param>
             <param name="annotation_gene_index" value="8" />
@@ -290,8 +290,8 @@
             <param name="nucleotide_db_selector" value="history"/>
             <param name="nucleotide_database">
                 <collection type="list">
-                    <element name="g__Bacteroides.s__Bacteroides_stercoris.centroids.v0.1.1" ftype="fasta" value="g__Bacteroides.s__Bacteroides_stercoris.centroids.v0.1.1.ffn.gz" />
-                    <element name="g__Bacteroides.s__Bacteroides_thetaiotaomicron.centroids.v0.1.1" ftype="fasta" value="g__Bacteroides.s__Bacteroides_thetaiotaomicron.centroids.v0.1.1.ffn.gz" />
+                    <element name="g__Bacteroides.s__Bacteroides_stercoris.centroids.v0.1.1" ftype="fasta.gz" value="g__Bacteroides.s__Bacteroides_stercoris.centroids.v0.1.1.ffn.gz" />
+                    <element name="g__Bacteroides.s__Bacteroides_thetaiotaomicron.centroids.v0.1.1" ftype="fasta.gz" value="g__Bacteroides.s__Bacteroides_thetaiotaomicron.centroids.v0.1.1.ffn.gz" />
                 </collection>
             </param>
             <param name="annotation_gene_index" value="8" />
--- a/repository_dependencies.xml	Tue Aug 01 07:52:52 2017 -0400
+++ b/repository_dependencies.xml	Sat Jan 25 23:18:24 2020 +0000
@@ -1,5 +1,5 @@
-<?xml version="1.0"?>
+<?xml version="1.0" ?>
 <repositories description="This requires the HUMAnN2 data manager definition to install all required databases.">
-    <repository changeset_revision="db1dd1044a39" name="data_manager_metaphlan2_database_downloader" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="8f7f70302257" name="data_manager_humann2_database_downloader" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-</repositories>
+    <repository changeset_revision="db1dd1044a39" name="data_manager_metaphlan2_database_downloader" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="afe83ae43e1e" name="data_manager_humann2_database_downloader" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+</repositories>
\ No newline at end of file