changeset 21:92845ffa3d11 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hisat2 commit 9bbf35d7f47e5ab6b78248c9907b71446d4e7b0c
author iuc
date Tue, 10 Apr 2018 18:40:33 -0400
parents 3c3d8f1e7804
children 586686992548
files hisat2.xml
diffstat 1 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/hisat2.xml	Mon Mar 26 17:23:35 2018 -0400
+++ b/hisat2.xml	Tue Apr 10 18:40:33 2018 -0400
@@ -14,6 +14,8 @@
     </stdio>
     <version_command>hisat2 --version</version_command>
     <command><![CDATA[
+## Use pipefail if available to quit with first non-zero exit code
+set -o | grep -q pipefail && set -o pipefail;
 
 ## Prepare HISAT2 index