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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c62791a7ff6fef8cb19b84465662d13effaffe1d
author iuc
date Tue, 13 May 2025 19:03:30 +0000
parents 9e282a956012
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9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
iuc
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1 # gffcompare v0.12.6 | Command line was:
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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2 #gffcompare -V -r reference_annotation -T -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf
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3 #
e52ca9ad69ca planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
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5 #= Summary for dataset: gffcompare_in1_gtf
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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6 # Query mRNAs : 5 in 5 loci (0 multi-exon transcripts)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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7 # (0 multi-transcript loci, ~1.0 transcripts per locus)
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9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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8 # Reference mRNAs : 4 in 4 loci (0 multi-exon)
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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9 # Super-loci w/ reference transcripts: 2
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e52ca9ad69ca planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
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10 #-----------------| Sensitivity | Precision |
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9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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11 Base level: 45.5 | 35.7 |
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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12 Exon level: 50.0 | 40.0 |
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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13 Transcript level: 25.0 | 20.0 |
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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14 Locus level: 25.0 | 20.0 |
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84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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16 Matching intron chains: 0
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9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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17 Matching transcripts: 1
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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18 Matching loci: 1
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84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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20 Missed exons: 2/4 ( 50.0%)
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21 Novel exons: 3/5 ( 60.0%)
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9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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22 Missed loci: 2/4 ( 50.0%)
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84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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23 Novel loci: 3/5 ( 60.0%)
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e52ca9ad69ca planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
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84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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25 #= Summary for dataset: gffcompare_in2_gtf
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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26 # Query mRNAs : 4 in 4 loci (0 multi-exon transcripts)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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27 # (0 multi-transcript loci, ~1.0 transcripts per locus)
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9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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28 # Reference mRNAs : 4 in 4 loci (0 multi-exon)
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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29 # Super-loci w/ reference transcripts: 4
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84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
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30 #-----------------| Sensitivity | Precision |
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9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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31 Base level: 100.0 | 100.0 |
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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32 Exon level: 100.0 | 100.0 |
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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33 Transcript level: 100.0 | 100.0 |
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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34 Locus level: 100.0 | 100.0 |
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36 Matching intron chains: 0
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9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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37 Matching transcripts: 4
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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38 Matching loci: 4
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e52ca9ad69ca planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
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9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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40 Missed exons: 0/4 ( 0.0%)
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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41 Novel exons: 0/4 ( 0.0%)
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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42 Missed loci: 0/4 ( 0.0%)
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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43 Novel loci: 0/4 ( 0.0%)
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45 Total union super-loci across all input datasets: 7
9e282a956012 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
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46 (0 multi-transcript, ~1.1 transcripts per locus)
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47 8 out of 8 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant)