Mercurial > repos > iuc > gffcompare

annotate test-data/gffcompare_out2.stats @ 3:84845ad0d35c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
author iuc
date Mon, 27 May 2019 13:53:51 -0400
parents 66f066ca5d60
children 9e282a956012
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
1 # gffcompare v0.11.2 | Command line was:
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
2 #gffcompare -r ref_annotation -e 100 -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf
0
e52ca9ad69ca planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
iuc
parents:
diff changeset
3 #
e52ca9ad69ca planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
iuc
parents:
diff changeset
4
3
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
5 #= Summary for dataset: gffcompare_in1_gtf
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
6 # Query mRNAs : 5 in 5 loci (0 multi-exon transcripts)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
7 # (0 multi-transcript loci, ~1.0 transcripts per locus)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
8 # Reference mRNAs : 1 in 1 loci (0 multi-exon)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
9 # Super-loci w/ reference transcripts: 1
0
e52ca9ad69ca planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
iuc
parents:
diff changeset
10 #-----------------| Sensitivity | Precision |
3
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
11 Base level: 94.7 | 42.9 |
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
12 Exon level: 100.0 | 40.0 |
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
13 Transcript level: 0.0 | 0.0 |
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
14 Locus level: 0.0 | 0.0 |
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
15
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
16 Matching intron chains: 0
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
17 Matching transcripts: 0
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
18 Matching loci: 0
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
19
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
20 Missed exons: 0/1 ( 0.0%)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
21 Novel exons: 3/5 ( 60.0%)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
22 Missed loci: 0/1 ( 0.0%)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
23 Novel loci: 3/5 ( 60.0%)
0
e52ca9ad69ca planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
iuc
parents:
diff changeset
24
3
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
25 #= Summary for dataset: gffcompare_in2_gtf
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
26 # Query mRNAs : 4 in 4 loci (0 multi-exon transcripts)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
27 # (0 multi-transcript loci, ~1.0 transcripts per locus)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
28 # Reference mRNAs : 1 in 1 loci (0 multi-exon)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
29 # Super-loci w/ reference transcripts: 1
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
30 #-----------------| Sensitivity | Precision |
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
31 Base level: 31.6 | 18.2 |
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
32 Exon level: 100.0 | 25.0 |
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
33 Transcript level: 0.0 | 0.0 |
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
34 Locus level: 0.0 | 0.0 |
0
e52ca9ad69ca planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
iuc
parents:
diff changeset
35
3
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
36 Matching intron chains: 0
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
37 Matching transcripts: 0
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
38 Matching loci: 0
0
e52ca9ad69ca planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
iuc
parents:
diff changeset
39
3
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
40 Missed exons: 0/1 ( 0.0%)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
41 Novel exons: 3/4 ( 75.0%)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
42 Missed loci: 0/1 ( 0.0%)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
43 Novel loci: 3/4 ( 75.0%)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
44
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
45 Total union super-loci across all input datasets: 6
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
46 (0 multi-transcript, ~1.3 transcripts per locus)
84845ad0d35c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
iuc
parents: 2
diff changeset
47 8 out of 8 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant)