Mercurial > repos > iuc > gemini_stats

diff gemini_stats.xml @ 3:bfd828995cf7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e4dce25c8dbeffca62c402f74ca733ddc7a6091b
author iuc
date Fri, 07 Dec 2018 12:41:27 -0500
parents 544f687c4534
children ed118e624798
line wrap: on
line diff
--- a/gemini_stats.xml	Tue Feb 16 05:55:38 2016 -0500
+++ b/gemini_stats.xml	Fri Dec 07 12:41:27 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Compute useful variant statistics</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -9,16 +9,18 @@
     <expand macro="version_command" />
     <command>
 <![CDATA[
+        @PROVIDE_ANNO_DATA@
+
         gemini @BINARY@
             $stats_type
 
-            #if $gt_filter.strip():
-                --gt-filter "${gt_filter}"
-            #end if
+            #set $multiline_sql_expr = $gt_filter
+            #set $cmdln_param = "--gt-filter"
+            @MULTILN_SQL_EXPR_TO_CMDLN@
 
-            #if $summarize.strip():
-                --gt-filter "${gt_filter}"
-            #end if
+            #set $multiline_sql_expr = $summarize
+            #set $cmdln_param = "--summarize"
+            @MULTILN_SQL_EXPR_TO_CMDLN@
 
             "${ infile }"
             > "${ outfile }"