Mercurial > repos > iuc > gemini_stats

comparison gemini_stats.xml @ 3:bfd828995cf7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e4dce25c8dbeffca62c402f74ca733ddc7a6091b
author iuc
date Fri, 07 Dec 2018 12:41:27 -0500
parents 544f687c4534
children ed118e624798
comparison
equal deleted inserted replaced
2:0f4e69394aa0 3:bfd828995cf7
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Compute useful variant statistics</description> 2 <description>Compute useful variant statistics</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">stats</token> 5 <token name="@BINARY@">stats</token>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <expand macro="stdio" /> 8 <expand macro="stdio" />
9 <expand macro="version_command" /> 9 <expand macro="version_command" />
10 <command> 10 <command>
11 <![CDATA[ 11 <![CDATA[
12 @PROVIDE_ANNO_DATA@
13
12 gemini @BINARY@ 14 gemini @BINARY@
13 $stats_type 15 $stats_type
14 16
15 #if $gt_filter.strip(): 17 #set $multiline_sql_expr = $gt_filter
16 --gt-filter "${gt_filter}" 18 #set $cmdln_param = "--gt-filter"
17 #end if 19 @MULTILN_SQL_EXPR_TO_CMDLN@
18 20
19 #if $summarize.strip(): 21 #set $multiline_sql_expr = $summarize
20 --gt-filter "${gt_filter}" 22 #set $cmdln_param = "--summarize"
21 #end if 23 @MULTILN_SQL_EXPR_TO_CMDLN@
22 24
23 "${ infile }" 25 "${ infile }"
24 > "${ outfile }" 26 > "${ outfile }"
25 ]]> 27 ]]>
26 </command> 28 </command>