Mercurial > repos > iuc > gemini_interactions

comparison gemini_interactions.xml @ 3:d3b3668b0ef2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e4dce25c8dbeffca62c402f74ca733ddc7a6091b
author iuc
date Fri, 07 Dec 2018 12:54:04 -0500
parents 0c020ebf6c65
children dd4dc1941e96
comparison
equal deleted inserted replaced
2:0c020ebf6c65 3:d3b3668b0ef2
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Find genes among variants that are interacting partners</description> 2 <description>Find genes among variants that are interacting partners</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">interactions</token> 5 <token name="@BINARY@">interactions</token>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <expand macro="stdio" /> 8 <expand macro="stdio" />
9 <expand macro="version_command" /> 9 <expand macro="version_command" />
10 <command> 10 <command>
11 <![CDATA[ 11 <![CDATA[
12 @PROVIDE_ANNO_DATA@
13
12 gemini 14 gemini
13 #if $annotation_databases:
14 --annotation-dir "${annotation_databases.fields.path}"
15 #end if
16
17 #if $gene.gene_selector == 'lof': 15 #if $gene.gene_selector == 'lof':
18 ## lof interactions is a separate program 16 ## lof interactions is a separate program
19 lof_interactions 17 lof_interactions
20 #else: 18 #else:
21 ## use normal gemini interactions program 19 ## use normal gemini interactions program