Mercurial > repos > iuc > gemini_fusions

diff gemini_fusions.xml @ 1:b737121efb78 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e4dce25c8dbeffca62c402f74ca733ddc7a6091b
author iuc
date Fri, 07 Dec 2018 12:35:07 -0500
parents c974176a17cc
children 142dbbe778c3
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line diff
--- a/gemini_fusions.xml	Tue Feb 16 05:52:33 2016 -0500
+++ b/gemini_fusions.xml	Fri Dec 07 12:35:07 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Identify somatic fusion genes from a GEMINI database</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -9,13 +9,10 @@
     <expand macro="version_command" />
     <command>
 <![CDATA[
-
-        gemini @BINARY@
+        @PROVIDE_ANNO_DATA@
 
-        #if $annotation_databases:
-            --annotation-dir "${ annotation_databases.fields.path }"
-        #end if
-
+        gemini
+        @BINARY@
         $in_cosmic_census
         
         #if float($min_quality) >= 0: