Mercurial > repos > iuc > gemini_fusions

comparison gemini_fusions.xml @ 1:b737121efb78 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e4dce25c8dbeffca62c402f74ca733ddc7a6091b
author iuc
date Fri, 07 Dec 2018 12:35:07 -0500
parents c974176a17cc
children 142dbbe778c3
comparison
equal deleted inserted replaced
0:c974176a17cc 1:b737121efb78
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Identify somatic fusion genes from a GEMINI database</description> 2 <description>Identify somatic fusion genes from a GEMINI database</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">fusions</token> 5 <token name="@BINARY@">fusions</token>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <expand macro="stdio" /> 8 <expand macro="stdio" />
9 <expand macro="version_command" /> 9 <expand macro="version_command" />
10 <command> 10 <command>
11 <![CDATA[ 11 <![CDATA[
12 @PROVIDE_ANNO_DATA@
12 13
13 gemini @BINARY@ 14 gemini
14 15 @BINARY@
15 #if $annotation_databases:
16 --annotation-dir "${ annotation_databases.fields.path }"
17 #end if
18
19 $in_cosmic_census 16 $in_cosmic_census
20 17
21 #if float($min_quality) >= 0: 18 #if float($min_quality) >= 0:
22 --min-qual $min_quality 19 --min-qual $min_quality
23 #end if 20 #end if