Mercurial > repos > iuc > gemini_dump

diff gemini_dump.xml @ 1:fd664729a382 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e4dce25c8dbeffca62c402f74ca733ddc7a6091b
author iuc
date Fri, 07 Dec 2018 12:52:37 -0500
parents 65845dad49e7
children 7d3062e6ef6a
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line diff
--- a/gemini_dump.xml	Tue Feb 16 05:56:28 2016 -0500
+++ b/gemini_dump.xml	Fri Dec 07 12:52:37 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Extract data from the Gemini DB</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -9,6 +9,8 @@
     <expand macro="version_command" />
     <command>
 <![CDATA[
+        @PROVIDE_ANNO_DATA@
+
         gemini @BINARY@
             $report
             $header
@@ -26,8 +28,8 @@
             <option value="--genotypes">All rows/columns from the variants table with one line per sample/genotype (--genotypes)</option>
             <option value="--samples">All rows/columns from the samples table (--samples)</option>
         </param>
-        <param argument="--header" type="boolean" label="Include a header of column names" truevalue="--header" falsevalue="" selected="False" />
-        <param argument="--tfam" type="boolean" label="Output sample information to TFAM information" truevalue="--tfam" falsevalue="" selected="False" />
+        <param argument="--header" type="boolean" label="Include a header of column names" truevalue="--header" falsevalue="" checked="False" />
+        <param argument="--tfam" type="boolean" label="Output sample information to TFAM information" truevalue="--tfam" falsevalue="" checked="False" />
     </inputs>
     <outputs>
         <data name="outfile" format="tabular" />