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comparison gemini_dump.xml @ 1:fd664729a382 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit e4dce25c8dbeffca62c402f74ca733ddc7a6091b
author iuc
date Fri, 07 Dec 2018 12:52:37 -0500
parents 65845dad49e7
children 7d3062e6ef6a
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0:65845dad49e7 1:fd664729a382
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Extract data from the Gemini DB</description> 2 <description>Extract data from the Gemini DB</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">dump</token> 5 <token name="@BINARY@">dump</token>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <expand macro="stdio" /> 8 <expand macro="stdio" />
9 <expand macro="version_command" /> 9 <expand macro="version_command" />
10 <command> 10 <command>
11 <![CDATA[ 11 <![CDATA[
12 @PROVIDE_ANNO_DATA@
13
12 gemini @BINARY@ 14 gemini @BINARY@
13 $report 15 $report
14 $header 16 $header
15 $tfam 17 $tfam
16 18
24 <param name="report" type="select" label="The information to be reported" help="(-t)"> 26 <param name="report" type="select" label="The information to be reported" help="(-t)">
25 <option value="--variants">All rows/columns from the variants table (--variants)</option> 27 <option value="--variants">All rows/columns from the variants table (--variants)</option>
26 <option value="--genotypes">All rows/columns from the variants table with one line per sample/genotype (--genotypes)</option> 28 <option value="--genotypes">All rows/columns from the variants table with one line per sample/genotype (--genotypes)</option>
27 <option value="--samples">All rows/columns from the samples table (--samples)</option> 29 <option value="--samples">All rows/columns from the samples table (--samples)</option>
28 </param> 30 </param>
29 <param argument="--header" type="boolean" label="Include a header of column names" truevalue="--header" falsevalue="" selected="False" /> 31 <param argument="--header" type="boolean" label="Include a header of column names" truevalue="--header" falsevalue="" checked="False" />
30 <param argument="--tfam" type="boolean" label="Output sample information to TFAM information" truevalue="--tfam" falsevalue="" selected="False" /> 32 <param argument="--tfam" type="boolean" label="Output sample information to TFAM information" truevalue="--tfam" falsevalue="" checked="False" />
31 </inputs> 33 </inputs>
32 <outputs> 34 <outputs>
33 <data name="outfile" format="tabular" /> 35 <data name="outfile" format="tabular" />
34 </outputs> 36 </outputs>
35 <tests> 37 <tests>