Mercurial > repos > iuc > gatk4_mutect2
diff test-data/Mutect2-out1.vcf @ 8:55e8a08e39e1 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gatk4 commit 30797e29f13902f17652cf35585e52b363c28a31
| author | iuc |
|---|---|
| date | Tue, 03 Feb 2026 18:50:29 +0000 |
| parents | d2c0c2698f58 |
| children |
line wrap: on
line diff
--- a/test-data/Mutect2-out1.vcf Wed Aug 24 17:58:18 2022 +0000 +++ b/test-data/Mutect2-out1.vcf Tue Feb 03 18:50:29 2026 +0000 @@ -4,6 +4,7 @@ ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)"> ##FORMAT=<ID=F1R2,Number=R,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting each allele"> ##FORMAT=<ID=F2R1,Number=R,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting each allele"> +##FORMAT=<ID=FAD,Number=R,Type=Integer,Description="Count of fragments supporting each allele."> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another; will always be heterozygous and is not intended to describe called alleles"> @@ -11,18 +12,19 @@ ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification"> ##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phasing set (typically the position of the first variant in the set)"> ##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias."> -##GATKCommandLine=<ID=Mutect2,CommandLine="Mutect2 --tumor-sample SRR8525881 --output output.vcf --input tumor.bam --reference reference.fa --QUIET true --f1r2-median-mq 50 --f1r2-min-bq 20 --f1r2-max-depth 200 --genotype-pon-sites false --genotype-germline-sites false --af-of-alleles-not-in-resource -1.0 --mitochondria-mode false --tumor-lod-to-emit 3.0 --initial-tumor-lod 2.0 --pcr-snv-qual 40 --pcr-indel-qual 40 --max-population-af 0.01 --downsampling-stride 1 --callable-depth 10 --max-suspicious-reads-per-alignment-start 0 --normal-lod 2.2 --ignore-itr-artifacts false --gvcf-lod-band -2.5 --gvcf-lod-band -2.0 --gvcf-lod-band -1.5 --gvcf-lod-band -1.0 --gvcf-lod-band -0.5 --gvcf-lod-band 0.0 --gvcf-lod-band 0.5 --gvcf-lod-band 1.0 --minimum-allele-fraction 0.0 --independent-mates false --disable-adaptive-pruning false --kmer-size 10 --kmer-size 25 --dont-increase-kmer-sizes-for-cycles false --allow-non-unique-kmers-in-ref false --num-pruning-samples 1 --min-dangling-branch-length 4 --recover-all-dangling-branches false --max-num-haplotypes-in-population 128 --min-pruning 2 --adaptive-pruning-initial-error-rate 0.001 --pruning-lod-threshold 2.302585092994046 --max-unpruned-variants 100 --linked-de-bruijn-graph false --disable-artificial-haplotype-recovery false --debug-assembly false --debug-graph-transformations false --capture-assembly-failure-bam false --error-correction-log-odds -Infinity --error-correct-reads false --kmer-length-for-read-error-correction 25 --min-observations-for-kmer-to-be-solid 20 --base-quality-score-threshold 18 --pair-hmm-gap-continuation-penalty 10 --pair-hmm-implementation FASTEST_AVAILABLE --pcr-indel-model CONSERVATIVE --phred-scaled-global-read-mismapping-rate 45 --native-pair-hmm-threads 4 --native-pair-hmm-use-double-precision false --bam-writer-type CALLED_HAPLOTYPES --dont-use-soft-clipped-bases false --min-base-quality-score 10 --smith-waterman JAVA --emit-ref-confidence NONE --max-mnp-distance 1 --force-call-filtered-alleles false --allele-informative-reads-overlap-margin 2 --min-assembly-region-size 50 --max-assembly-region-size 300 --active-probability-threshold 0.002 --max-prob-propagation-distance 50 --force-active false --assembly-region-padding 100 --padding-around-indels 75 --padding-around-snps 20 --padding-around-strs 75 --max-reads-per-alignment-start 50 --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays --disable-tool-default-read-filters false --max-read-length 2147483647 --min-read-length 30 --minimum-mapping-quality 20 --disable-tool-default-annotations false --enable-all-annotations false",Version="4.1.7.0",Date="May 8, 2020 3:30:52 PM CEST"> +##GATKCommandLine=<ID=Mutect2,CommandLine="Mutect2 --tumor-sample SRR8525881 --output output.vcf --input tumor.bam --reference reference.fa --QUIET true --f1r2-median-mq 50 --f1r2-min-bq 20 --f1r2-max-depth 200 --flow-likelihood-parallel-threads 0 --flow-likelihood-optimized-comp false --trim-to-haplotype true --exact-matching false --flow-use-t0-tag false --flow-remove-non-single-base-pair-indels false --flow-remove-one-zero-probs false --flow-quantization-bins 121 --flow-fill-empty-bins-value 0.001 --flow-symmetric-indel-probs false --flow-report-insertion-or-deletion false --flow-disallow-probs-larger-than-call false --flow-lump-probs false --flow-retain-max-n-probs-base-format false --flow-probability-scaling-factor 10 --flow-order-cycle-length 4 --keep-boundary-flows false --genotype-pon-sites false --genotype-germline-sites false --genotype-germline-sites-fraction 1.0 --af-of-alleles-not-in-resource -1.0 --mitochondria-mode false --permutect-ref-downsample 10 --permutect-alt-downsample 20 --permutect-non-artifact-ratio 1 --permutect-dataset-mode ILLUMINA --tumor-lod-to-emit 3.0 --initial-tumor-lod 2.0 --pcr-snv-qual 40 --pcr-indel-qual 40 --base-qual-correction-factor 5 --max-population-af 0.01 --downsampling-stride 1 --callable-depth 10 --max-suspicious-reads-per-alignment-start 0 --normal-lod 2.2 --ignore-itr-artifacts false --gvcf-lod-band -2.5 --gvcf-lod-band -2.0 --gvcf-lod-band -1.5 --gvcf-lod-band -1.0 --gvcf-lod-band -0.5 --gvcf-lod-band 0.0 --gvcf-lod-band 0.5 --gvcf-lod-band 1.0 --minimum-allele-fraction 0.0 --independent-mates false --flow-mode NONE --disable-adaptive-pruning false --kmer-size 10 --kmer-size 25 --dont-increase-kmer-sizes-for-cycles false --allow-non-unique-kmers-in-ref false --num-pruning-samples 1 --min-dangling-branch-length 4 --recover-all-dangling-branches false --max-num-haplotypes-in-population 128 --min-pruning 2 --adaptive-pruning-initial-error-rate 0.001 --pruning-lod-threshold 2.302585092994046 --pruning-seeding-lod-threshold 9.210340371976184 --max-unpruned-variants 100 --linked-de-bruijn-graph false --disable-artificial-haplotype-recovery false --enable-legacy-graph-cycle-detection false --debug-assembly false --debug-graph-transformations false --capture-assembly-failure-bam false --num-matching-bases-in-dangling-end-to-recover -1 --error-correction-log-odds -Infinity --error-correct-reads false --kmer-length-for-read-error-correction 25 --min-observations-for-kmer-to-be-solid 20 --likelihood-calculation-engine PairHMM --base-quality-score-threshold 18 --dragstr-het-hom-ratio 2 --dont-use-dragstr-pair-hmm-scores false --pair-hmm-gap-continuation-penalty 10 --expected-mismatch-rate-for-read-disqualification 0.02 --pair-hmm-implementation FASTEST_AVAILABLE --pcr-indel-model CONSERVATIVE --phred-scaled-global-read-mismapping-rate 45 --disable-symmetric-hmm-normalizing false --disable-cap-base-qualities-to-map-quality false --enable-dynamic-read-disqualification-for-genotyping false --dynamic-read-disqualification-threshold 1.0 --native-pair-hmm-threads 4 --native-pair-hmm-use-double-precision false --flow-hmm-engine-min-indel-adjust 6 --flow-hmm-engine-flat-insertion-penatly 45 --flow-hmm-engine-flat-deletion-penatly 45 --pileup-detection false --use-pdhmm false --use-pdhmm-overlap-optimization false --make-determined-haps-from-pd-code false --print-pileupcalling-status false --fallback-gga-if-pdhmm-fails true --pileup-detection-enable-indel-pileup-calling false --pileup-detection-active-region-phred-threshold 0.0 --num-artificial-haplotypes-to-add-per-allele 5 --artifical-haplotype-filtering-kmer-size 10 --pileup-detection-snp-alt-threshold 0.1 --pileup-detection-indel-alt-threshold 0.1 --pileup-detection-absolute-alt-depth 0.0 --pileup-detection-snp-adjacent-to-assembled-indel-range 5 --pileup-detection-snp-basequality-filter 12 --pileup-detection-bad-read-tolerance 0.0 --pileup-detection-proper-pair-read-badness true --pileup-detection-edit-distance-read-badness-threshold 0.08 --pileup-detection-chimeric-read-badness true --pileup-detection-template-mean-badness-threshold 0.0 --pileup-detection-template-std-badness-threshold 0.0 --pileup-detection-filter-assembly-alt-bad-read-tolerance 0.0 --pileup-detection-edit-distance-read-badness-for-assembly-filtering-threshold 0.12 --bam-writer-type CALLED_HAPLOTYPES --dont-use-soft-clipped-bases false --override-fragment-softclip-check false --min-base-quality-score 10 --smith-waterman FASTEST_AVAILABLE --emit-ref-confidence NONE --max-mnp-distance 1 --force-call-filtered-alleles false --reference-model-deletion-quality 30 --soft-clip-low-quality-ends false --allele-informative-reads-overlap-margin 2 --smith-waterman-dangling-end-match-value 25 --smith-waterman-dangling-end-mismatch-penalty -50 --smith-waterman-dangling-end-gap-open-penalty -110 --smith-waterman-dangling-end-gap-extend-penalty -6 --smith-waterman-haplotype-to-reference-match-value 200 --smith-waterman-haplotype-to-reference-mismatch-penalty -150 --smith-waterman-haplotype-to-reference-gap-open-penalty -260 --smith-waterman-haplotype-to-reference-gap-extend-penalty -11 --smith-waterman-read-to-haplotype-match-value 10 --smith-waterman-read-to-haplotype-mismatch-penalty -15 --smith-waterman-read-to-haplotype-gap-open-penalty -30 --smith-waterman-read-to-haplotype-gap-extend-penalty -5 --flow-assembly-collapse-hmer-size 0 --flow-assembly-collapse-partial-mode false --flow-filter-alleles false --flow-filter-alleles-qual-threshold 30.0 --flow-filter-alleles-sor-threshold 3.0 --flow-filter-lone-alleles false --flow-filter-alleles-debug-graphs false --min-assembly-region-size 50 --max-assembly-region-size 300 --active-probability-threshold 0.002 --max-prob-propagation-distance 50 --force-active false --assembly-region-padding 100 --padding-around-indels 75 --padding-around-snps 20 --padding-around-strs 75 --max-extension-into-assembly-region-padding-legacy 25 --max-reads-per-alignment-start 50 --enable-legacy-assembly-region-trimming false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --max-variants-per-shard 0 --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays --disable-tool-default-read-filters false --max-read-length 2147483647 --min-read-length 30 --minimum-mapping-quality 20 --disable-tool-default-annotations false --enable-all-annotations false",Version="4.6.2.0",Date="February 2, 2026, 12:29:00?AM GMT"> ##INFO=<ID=AS_SB_TABLE,Number=1,Type=String,Description="Allele-specific forward/reverse read counts for strand bias tests. Includes the reference and alleles separated by |."> ##INFO=<ID=AS_UNIQ_ALT_READ_COUNT,Number=A,Type=Integer,Description="Number of reads with unique start and mate end positions for each alt at a variant site"> ##INFO=<ID=CONTQ,Number=1,Type=Float,Description="Phred-scaled qualities that alt allele are not due to contamination"> ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered"> -##INFO=<ID=ECNT,Number=1,Type=Integer,Description="Number of events in this haplotype"> +##INFO=<ID=ECNT,Number=1,Type=Integer,Description="Number of potential somatic events in the assembly region"> +##INFO=<ID=ECNTH,Number=A,Type=Integer,Description="Number of somatic events in best supporting haplotype for each alt allele"> ##INFO=<ID=GERMQ,Number=1,Type=Integer,Description="Phred-scaled quality that alt alleles are not germline variants"> -##INFO=<ID=MBQ,Number=R,Type=Integer,Description="median base quality"> -##INFO=<ID=MFRL,Number=R,Type=Integer,Description="median fragment length"> -##INFO=<ID=MMQ,Number=R,Type=Integer,Description="median mapping quality"> +##INFO=<ID=MBQ,Number=R,Type=Integer,Description="median base quality by allele"> +##INFO=<ID=MFRL,Number=R,Type=Integer,Description="median fragment length by allele"> +##INFO=<ID=MMQ,Number=R,Type=Integer,Description="median mapping quality by allele"> ##INFO=<ID=MPOS,Number=A,Type=Integer,Description="median distance from end of read"> -##INFO=<ID=NALOD,Number=A,Type=Float,Description="Negative log 10 odds of artifact in normal with same allele fraction as tumor"> +##INFO=<ID=NALOD,Number=A,Type=Float,Description="Log 10 odds of artifact in normal with same allele fraction as tumor"> ##INFO=<ID=NCount,Number=1,Type=Integer,Description="Count of N bases in the pileup"> ##INFO=<ID=NLOD,Number=A,Type=Float,Description="Normal log 10 likelihood ratio of diploid het or hom alt genotypes"> ##INFO=<ID=OCM,Number=1,Type=Integer,Description="Number of alt reads whose original alignment doesn't match the current contig."> @@ -42,52 +44,47 @@ ##source=Mutect2 ##tumor_sample=SRR8525881 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SRR8525881 -K03455 4098 . T C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;MBQ=0,34;MFRL=0,158;MMQ=60,60;MPOS=3;POPAF=7.30;TLOD=3.58 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,1:0.667:1:0,0:0,1:0,0,1,0 -K03455 4145 . T C . . AS_SB_TABLE=0,0|3,1;DP=4;ECNT=13;MBQ=0,27;MFRL=0,242;MMQ=60,60;MPOS=39;POPAF=7.30;TLOD=17.40 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,4:0.800:4:0,1:0,3:0,0,3,1 -K03455 4190 . A G . . AS_SB_TABLE=2,0|11,2;DP=15;ECNT=13;MBQ=38,37;MFRL=290,303;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=54.51 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:2,13:0.800:15:0,4:1,9:0|1:4190_A_G:4190:2,0,11,2 -K03455 4209 . GC AC,AA . . AS_SB_TABLE=1,0|4,0|13,2;DP=20;ECNT=13;MBQ=37,35,36;MFRL=200,295,303;MMQ=60,60,60;MPOS=10,36;POPAF=7.30,7.30;TLOD=13.46,61.35 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:1,4,15:0.238,0.667:20:1,2,4:0,2,11:1,0,17,2 -K03455 4233 . T C . . AS_SB_TABLE=18,4|5,1;DP=28;ECNT=13;MBQ=38,39;MFRL=267,268;MMQ=60,60;MPOS=26;POPAF=7.30;TLOD=19.09 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 1|0:22,6:0.261:28:7,2:13,4:1|0:4190_A_G:4190:18,4,5,1 -K03455 4250 . G A . . AS_SB_TABLE=32,5|2,2;DP=42;ECNT=13;MBQ=37,28;MFRL=281,206;MMQ=60,60;MPOS=21;POPAF=7.30;TLOD=6.73 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:37,4:0.124:41:16,3:19,1:32,5,2,2 -K03455 4259 . T A . . AS_SB_TABLE=7,1|30,6;DP=45;ECNT=13;MBQ=35,35;MFRL=259,280;MMQ=60,60;MPOS=35;POPAF=7.30;TLOD=151.55 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:8,36:0.786:44:3,17:5,15:0|1:4259_T_A:4259:7,1,30,6 -K03455 4262 . A T . . AS_SB_TABLE=30,6|7,1;DP=45;ECNT=13;MBQ=37,37;MFRL=280,259;MMQ=60,60;MPOS=41;POPAF=7.30;TLOD=26.50 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 1|0:36,8:0.214:44:18,3:15,4:1|0:4259_T_A:4259:30,6,7,1 -K03455 4268 . G A . . AS_SB_TABLE=24,7|14,0;DP=45;ECNT=13;MBQ=37,38;MFRL=272,276;MMQ=60,60;MPOS=28;POPAF=7.30;TLOD=50.83 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:31,14:0.349:45:12,8:15,5:24,7,14,0 -K03455 4271 . A G . . AS_SB_TABLE=31,7|10,0;DP=48;ECNT=13;MBQ=37,33;MFRL=259,311;MMQ=60,60;MPOS=29;POPAF=7.30;TLOD=33.95 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:38,10:0.239:48:15,7:18,2:31,7,10,0 -K03455 4277 . C T . . AS_SB_TABLE=10,2|34,6;DP=52;ECNT=13;MBQ=37,37;MFRL=244,280;MMQ=60,60;MPOS=35;POPAF=7.30;TLOD=167.14 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:12,40:0.755:52:3,20:5,18:0|1:4259_T_A:4259:10,2,34,6 -K03455 4279 . GT AC,AT . . AS_SB_TABLE=17,2|18,4|9,2;DP=53;ECNT=13;MBQ=36,33,37;MFRL=263,229,272;MMQ=60,60,60;MPOS=34,39;POPAF=7.30,7.30;TLOD=61.69,29.10 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:19,22,11:0.411,0.216:52:8,9,6:9,9,5:17,2,27,6 -K03455 4283 . T C . . AS_SB_TABLE=44,7|2,1;DP=54;ECNT=13;MBQ=35,37;MFRL=272,254;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=6.71 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:51,3:0.078:54:24,1:23,2:44,7,2,1 -K03455 4310 . C T . . AS_SB_TABLE=25,14|4,3;DP=47;ECNT=15;MBQ=20,20;MFRL=252,254;MMQ=60,60;MPOS=33;POPAF=7.30;TLOD=18.13 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:39,7:0.171:46:21,1:13,4:25,14,4,3 -K03455 4313 . G A . . AS_SB_TABLE=26,16|2,1;DP=45;ECNT=15;MBQ=26,20;MFRL=252,200;MMQ=60,60;MPOS=56;POPAF=7.30;TLOD=4.55 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:42,3:0.073:45:18,1:15,1:26,16,2,1 -K03455 4320 . G A . . AS_SB_TABLE=19,14|6,5;DP=45;ECNT=15;MBQ=20,20;MFRL=252,254;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=46.17 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:33,11:0.263:44:17,1:13,6:19,14,6,5 -K03455 4330 . A G . . AS_SB_TABLE=25,19|3,1;DP=49;ECNT=15;MBQ=20,38;MFRL=250,276;MMQ=60,60;MPOS=60;POPAF=7.30;TLOD=13.53 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:44,4:0.111:48:19,3:20,0:25,19,3,1 -K03455 4334 . A G . . AS_SB_TABLE=27,18|1,4;DP=50;ECNT=15;MBQ=33,36;MFRL=252,254;MMQ=60,60;MPOS=15;POPAF=7.30;TLOD=14.29 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:45,5:0.133:50:20,2:22,3:27,18,1,4 -K03455 4340 . A G . . AS_SB_TABLE=15,9|12,15;DP=52;ECNT=15;MBQ=33,20;MFRL=259,252;MMQ=60,60;MPOS=37;POPAF=7.30;TLOD=102.69 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:24,27:0.511:51:11,13:12,11:0|1:4340_A_G:4340:15,9,12,15 -K03455 4343 . C A . . AS_SB_TABLE=15,9|11,15;DP=50;ECNT=15;MBQ=33,20;MFRL=259,229;MMQ=60,60;MPOS=40;POPAF=7.30;TLOD=102.69 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:24,26:0.511:50:9,12:9,10:0|1:4340_A_G:4340:15,9,11,15 -K03455 4345 . GC AT . . AS_SB_TABLE=21,19|7,7;DP=54;ECNT=15;MBQ=20,37;MFRL=218,251;MMQ=60,60;MPOS=21;POPAF=7.30;TLOD=54.30 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:40,14:0.277:54:14,5:15,8:21,19,7,7 -K03455 4346 . C T . . AS_SB_TABLE=17,18|3,1;DP=53;ECNT=15;MBQ=20,26;MFRL=202,276;MMQ=60,60;MPOS=44;POPAF=7.30;TLOD=13.66 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:35,4:0.130:39:13,2:11,0:17,18,3,1 -K03455 4358 . T C . . AS_SB_TABLE=21,22|2,5;DP=51;ECNT=15;MBQ=20,35;MFRL=229,254;MMQ=60,60;MPOS=29;POPAF=7.30;TLOD=17.73 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:43,7:0.159:50:15,4:22,3:21,22,2,5 -K03455 4361 . GCT G,ACT . . AS_SB_TABLE=6,3|7,8|11,17;DP=52;ECNT=15;MBQ=36,33,20;MFRL=229,247,208;MMQ=60,60,60;MPOS=32,32;POPAF=7.30,7.30;TLOD=56.30,98.69 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:9,15,28:0.277,0.532:52:5,4,9:3,9,13:6,3,18,25 -K03455 4364 . A AAG . . AS_SB_TABLE=17,20|7,8;DP=54;ECNT=15;MBQ=33,33;MFRL=209,247;MMQ=60,60;MPOS=33;POPAF=7.30;TLOD=55.51 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:37,15:0.282:52:17,4:18,9:17,20,7,8 -K03455 4370 . A G . . AS_SB_TABLE=17,17|7,14;DP=56;ECNT=15;MBQ=20,37;MFRL=199,290;MMQ=60,60;MPOS=37;POPAF=7.30;TLOD=63.69 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:34,21:0.439:55:9,9:16,12:17,17,7,14 -K03455 4376 . C T . . AS_SB_TABLE=10,19|13,13;DP=57;ECNT=15;MBQ=37,20;MFRL=252,244;MMQ=60,60;MPOS=30;POPAF=7.30;TLOD=86.13 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:29,26:0.437:55:9,10:16,13:10,19,13,13 -K03455 4397 . T C . . AS_SB_TABLE=18,19|13,10;DP=66;ECNT=15;MBQ=33,34;MFRL=281,247;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=82.73 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:37,23:0.394:60:10,9:21,12:18,19,13,10 -K03455 4416 . C T . . AS_SB_TABLE=22,34|6,6;DP=68;ECNT=21;MBQ=37,37;MFRL=270,305;MMQ=60,60;MPOS=47;POPAF=7.30;TLOD=37.06 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:56,12:0.197:68:20,5:33,4:22,34,6,6 -K03455 4418 . A G . . AS_SB_TABLE=26,38|1,2;DP=67;ECNT=21;MBQ=37,37;MFRL=284,229;MMQ=60,60;MPOS=45;POPAF=7.30;TLOD=6.77 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:64,3:0.062:67:24,3:35,0:26,38,1,2 -K03455 4421 . T C . . AS_SB_TABLE=11,20|16,20;DP=67;ECNT=21;MBQ=34,38;MFRL=263,291;MMQ=60,60;MPOS=35;POPAF=7.30;TLOD=142.09 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:31,36:0.538:67:16,14:12,21:11,20,16,20 -K03455 4424 . T C . . AS_SB_TABLE=13,24|13,15;DP=65;ECNT=21;MBQ=37,38;MFRL=254,295;MMQ=60,60;MPOS=35;POPAF=7.30;TLOD=102.79 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:37,28:0.444:65:15,9:15,17:13,24,13,15 -K03455 4430 . T C . . AS_SB_TABLE=25,37|1,2;DP=65;ECNT=21;MBQ=37,36;MFRL=280,300;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=7.02 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:62,3:0.063:65:26,2:32,1:25,37,1,2 -K03455 4439 . A G . . AS_SB_TABLE=22,31|3,4;DP=60;ECNT=21;MBQ=38,35;MFRL=287,210;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=21.26 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:53,7:0.121:60:23,3:26,4:22,31,3,4 -K03455 4442 . AG GA . . AS_SB_TABLE=21,30|3,4;DP=59;ECNT=21;MBQ=37,33;MFRL=287,209;MMQ=60,60;MPOS=27;POPAF=7.30;TLOD=18.12 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:51,7:0.142:58:20,2:25,5:21,30,3,4 -K03455 4443 . G A . . AS_SB_TABLE=12,19|11,12;DP=59;ECNT=21;MBQ=35,38;MFRL=276,291;MMQ=60,60;MPOS=38;POPAF=7.30;TLOD=78.51 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:31,23:0.421:54:14,10:13,10:12,19,11,12 -K03455 4448 . C A . . AS_SB_TABLE=22,31|1,2;DP=57;ECNT=21;MBQ=37,20;MFRL=287,126;MMQ=60,60;MPOS=25;POPAF=7.30;TLOD=8.91 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:53,3:0.055:56:21,0:27,2:22,31,1,2 -K03455 4449 . C T . . AS_SB_TABLE=13,16|11,15;DP=55;ECNT=21;MBQ=37,38;MFRL=209,322;MMQ=60,60;MPOS=37;POPAF=7.30;TLOD=97.76 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:29,26:0.491:55:11,12:16,13:13,16,11,15 -K03455 4460 . T C . . AS_SB_TABLE=22,22|2,5;DP=51;ECNT=21;MBQ=37,37;MFRL=279,321;MMQ=60,60;MPOS=26;POPAF=7.30;TLOD=22.02 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:44,7:0.163:51:17,3:24,3:22,22,2,5 -K03455 4465 . T TGGCC . . AS_SB_TABLE=19,20|4,4;DP=50;ECNT=21;MBQ=37,35;MFRL=290,176;MMQ=60,60;MPOS=30;POPAF=7.30;TLOD=26.66 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:39,8:0.155:47:14,6:22,1:19,20,4,4 -K03455 4466 . A G,AGTG . . AS_SB_TABLE=16,17|2,3|4,4;DP=49;ECNT=21;MBQ=37,38,37;MFRL=310,207,176;MMQ=60,60,60;MPOS=20,25;POPAF=7.30,7.30;TLOD=15.50,28.09 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:33,5,8:0.154,0.179:46:12,1,6:16,4,1:16,17,6,7 -K03455 4478 . T C . . AS_SB_TABLE=12,13|5,6;DP=36;ECNT=21;MBQ=37,32;MFRL=323,205;MMQ=60,60;MPOS=10;POPAF=7.30;TLOD=44.55 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:25,11:0.306:36:9,6:15,4:12,13,5,6 -K03455 4505 . A G . . AS_SB_TABLE=2,1|11,6;DP=20;ECNT=21;MBQ=39,37;MFRL=394,323;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=72.12 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:3,17:0.818:20:2,6:1,8:2,1,11,6 -K03455 4508 . A T . . AS_SB_TABLE=2,3|10,3;DP=18;ECNT=21;MBQ=39,35;MFRL=287,335;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=52.71 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:5,13:0.700:18:3,5:2,8:2,3,10,3 -K03455 4511 . G A . . AS_SB_TABLE=2,1|10,5;DP=18;ECNT=21;MBQ=37,35;MFRL=394,323;MMQ=60,60;MPOS=28;POPAF=7.30;TLOD=62.74 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:3,15:0.800:18:2,5:1,7:2,1,10,5 -K03455 4526 . T C . . AS_SB_TABLE=0,0|11,2;DP=13;ECNT=21;MBQ=0,36;MFRL=0,323;MMQ=60,60;MPOS=28;POPAF=7.30;TLOD=57.35 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,13:0.933:13:0,7:0,6:0,0,11,2 -K03455 4528 . T TCA . . AS_SB_TABLE=10,1|1,1;DP=13;ECNT=21;MBQ=38,37;MFRL=323,421;MMQ=60,60;MPOS=38;POPAF=7.30;TLOD=5.52 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:11,2:0.200:13:5,1:4,1:0|1:4528_T_TCA:4528:10,1,1,1 -K03455 4530 . CTT C . . AS_SB_TABLE=9,1|1,1;DP=13;ECNT=21;MBQ=35,38;MFRL=323,421;MMQ=60,60;MPOS=34;POPAF=7.30;RPA=4,2;RU=T;STR;TLOD=6.12 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:10,2:0.213:12:5,1:4,1:0|1:4528_T_TCA:4528:9,1,1,1 -K03455 4532 . T C . . AS_SB_TABLE=0,0|11,0;DP=13;ECNT=21;MBQ=0,27;MFRL=0,323;MMQ=60,60;MPOS=21;POPAF=7.30;TLOD=39.42 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,11:0.926:11:0,6:0,2:0,0,11,0 +K03455 4098 . T C . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=5;ECNTH=2;MBQ=0,34;MFRL=0,222;MMQ=60,60;MPOS=3;POPAF=7.30;TLOD=7.14 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:0,2:0.750:2:0,1:0,1:0,2:0,0,2,0 +K03455 4139 . G A . . AS_SB_TABLE=13,1|1,1;DP=16;ECNT=5;ECNTH=3;MBQ=37,27;MFRL=321,321;MMQ=60,60;MPOS=18;POPAF=7.30;TLOD=3.04 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:14,2:0.175:16:4,0:8,2:13,2:13,1,1,1 +K03455 4145 . T C . . AS_SB_TABLE=4,0|11,2;DP=17;ECNT=5;ECNTH=2;MBQ=39,33;MFRL=370,326;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=40.51 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:4,13:0.718:17:2,3:2,7:4,12:4,0,11,2 +K03455 4148 . G A . . AS_SB_TABLE=9,2|6,0;DP=17;ECNT=5;ECNTH=3;MBQ=33,38;MFRL=316,338;MMQ=60,60;MPOS=33;POPAF=7.30;TLOD=21.00 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:11,6:0.393:17:3,2:6,4:10,6:9,2,6,0 +K03455 4166 . C T . . AS_SB_TABLE=18,2|3,0;DP=23;ECNT=5;ECNTH=3;MBQ=35,37;MFRL=321,447;MMQ=60,60;MPOS=41;POPAF=7.30;TLOD=6.40 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:20,3:0.167:23:2,1:11,2:19,3:18,2,3,0 +K03455 4190 . A G . . AS_SB_TABLE=5,0|10,2;DP=17;ECNT=23;ECNTH=9;MBQ=38,38;MFRL=293,295;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=39.32 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:5,12:0.649:17:3,4:2,6:5,10:5,0,10,2 +K03455 4209 . GC AA,AC . . AS_SB_TABLE=0,0|12,2|4,0;DP=18;ECNT=23;ECNTH=8,14;MBQ=0,37,38;MFRL=0,288,310;MMQ=60,60,60;MPOS=41,55;POPAF=7.30,7.30;TLOD=57.24,11.52 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1/2:0,14,4:0.685,0.262:18:0,6,2:0,6,2:0,12,4:0,0,16,2 +K03455 4233 . T C . . AS_SB_TABLE=14,3|4,0;DP=21;ECNT=23;ECNTH=14;MBQ=38,35;MFRL=286,310;MMQ=60,60;MPOS=43;POPAF=7.30;TLOD=12.39 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:17,4:0.238:21:7,2:7,2:15,4:14,3,4,0 +K03455 4259 . T A . . AS_SB_TABLE=4,0|15,5;DP=25;ECNT=23;ECNTH=8;MBQ=33,37;MFRL=294,271;MMQ=60,60;MPOS=40;POPAF=7.30;TLOD=83.81 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:4,20:0.792:24:2,10:2,7:4,18:4,0,15,5 +K03455 4262 . A T . . AS_SB_TABLE=15,5|4,0;DP=25;ECNT=23;ECNTH=11;MBQ=28,35;MFRL=271,294;MMQ=60,60;MPOS=14;POPAF=7.30;TLOD=12.77 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:20,4:0.208:24:9,1:6,2:18,4:0|1:4262_A_T:4262:15,5,4,0 +K03455 4268 . G A . . AS_SB_TABLE=15,5|4,0;DP=24;ECNT=23;ECNTH=9;MBQ=34,28;MFRL=271,294;MMQ=60,60;MPOS=13;POPAF=7.30;TLOD=12.77 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:20,4:0.208:24:9,0:7,2:18,4:15,5,4,0 +K03455 4277 . C T . . AS_SB_TABLE=4,1|15,5;DP=25;ECNT=23;ECNTH=8;MBQ=20,33;MFRL=247,271;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=83.81 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 1|0:5,20:0.792:25:1,10:1,7:4,18:1|0:4262_A_T:4262:4,1,15,5 +K03455 4279 . GT AC,AT . . AS_SB_TABLE=4,1|12,3|3,2;DP=25;ECNT=23;ECNTH=8,8;MBQ=20,37,20;MFRL=247,290,184;MMQ=60,60,60;MPOS=34,33;POPAF=7.30,7.30;TLOD=47.62,10.92 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1/2:5,15,5:0.601,0.199:25:1,8,2:2,5,2:4,14,4:4,1,15,5 +K03455 4310 . C T . . AS_SB_TABLE=14,9|3,3;DP=29;ECNT=23;ECNTH=14;MBQ=20,20;MFRL=206,251;MMQ=60,60;MPOS=27;POPAF=7.30;TLOD=15.61 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:23,6:0.214:29:10,0:4,3:21,5:14,9,3,3 +K03455 4320 . G A . . AS_SB_TABLE=12,10|3,4;DP=29;ECNT=23;ECNTH=14;MBQ=20,20;MFRL=227,254;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=29.08 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:22,7:0.242:29:9,0:6,4:21,6:12,10,3,4 +K03455 4334 . A G . . AS_SB_TABLE=16,12|1,4;DP=33;ECNT=23;ECNTH=14;MBQ=20,33;MFRL=250,254;MMQ=60,60;MPOS=15;POPAF=7.30;TLOD=15.63 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:28,5:0.194:33:9,2:11,3:24,5:16,12,1,4 +K03455 4340 . A G . . AS_SB_TABLE=6,6|11,12;DP=35;ECNT=23;ECNTH=8;MBQ=35,20;MFRL=225,252;MMQ=60,60;MPOS=40;POPAF=7.30;TLOD=100.52 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:12,23:0.656:35:3,9:7,7:10,20:0|1:4340_A_G:4340:6,6,11,12 +K03455 4343 . C A . . AS_SB_TABLE=6,6|10,13;DP=35;ECNT=23;ECNTH=8;MBQ=33,20;MFRL=225,252;MMQ=60,60;MPOS=43;POPAF=7.30;TLOD=104.83 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:12,23:0.667:35:3,8:5,6:10,21:0|1:4340_A_G:4340:6,6,10,13 +K03455 4345 . GC AT . . AS_SB_TABLE=12,15|6,6;DP=39;ECNT=23;ECNTH=14;MBQ=20,37;MFRL=197,225;MMQ=60,60;MPOS=27;POPAF=7.30;TLOD=49.00 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 1|0:27,12:0.314:39:6,3:9,6:23,10:1|0:4340_A_G:4340:12,15,6,6 +K03455 4358 . T C . . AS_SB_TABLE=15,17|2,5;DP=40;ECNT=23;ECNTH=14;MBQ=20,35;MFRL=200,254;MMQ=60,60;MPOS=29;POPAF=7.30;TLOD=18.77 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:32,7:0.200:39:7,3:12,3:27,6:15,17,2,5 +K03455 4361 . GCT ACT,G . . AS_SB_TABLE=1,2|11,14|7,7;DP=42;ECNT=23;ECNTH=8,14;MBQ=18,20,34;MFRL=106,209,226;MMQ=60,60,60;MPOS=33,37;POPAF=7.30,7.30;TLOD=101.07,53.78 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1/2:3,25,14:0.615,0.308:42:0,5,4:0,9,7:2,23,11:1,2,18,21 +K03455 4364 . A AAG . . AS_SB_TABLE=12,16|8,7;DP=44;ECNT=23;ECNTH=14;MBQ=33,31;MFRL=206,205;MMQ=60,60;MPOS=38;POPAF=7.30;TLOD=56.51 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:28,15:0.333:43:7,4:12,7:25,12:12,16,8,7 +K03455 4370 . A G . . AS_SB_TABLE=11,13|7,13;DP=46;ECNT=23;ECNTH=8;MBQ=20,37;MFRL=191,291;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=64.83 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:24,20:0.538:44:6,5:9,9:17,20:11,13,7,13 +K03455 4376 . C T . . AS_SB_TABLE=9,17|10,12;DP=49;ECNT=23;ECNTH=14;MBQ=37,20;MFRL=267,204;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=76.44 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:26,22:0.404:48:4,6:11,9:24,16:9,17,10,12 +K03455 4397 . T C . . AS_SB_TABLE=17,18|13,9;DP=62;ECNT=23;ECNTH=14;MBQ=32,33;MFRL=290,247;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=79.03 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:35,22:0.386:57:5,8:14,10:31,19:17,18,13,9 +K03455 4416 . C T . . AS_SB_TABLE=16,21|2,1;DP=40;ECNT=19;ECNTH=7;MBQ=37,20;MFRL=281,287;MMQ=60,60;MPOS=9;POPAF=7.30;TLOD=8.03 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:37,3:0.103:40:13,0:18,1:34,3:16,21,2,1 +K03455 4421 . T C . . AS_SB_TABLE=3,5|15,17;DP=40;ECNT=19;ECNTH=9;MBQ=34,38;MFRL=218,289;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=135.40 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:8,32:0.802:40:4,11:1,16:7,30:3,5,15,17 +K03455 4424 . T C . . AS_SB_TABLE=4,7|14,15;DP=40;ECNT=19;ECNTH=9;MBQ=20,38;MFRL=206,291;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=111.14 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:11,29:0.748:40:4,8:1,16:9,28:4,7,14,15 +K03455 4439 . A G . . AS_SB_TABLE=15,17|1,2;DP=35;ECNT=19;ECNTH=6;MBQ=38,20;MFRL=291,126;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=8.08 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:32,3:0.088:35:11,1:16,1:30,2:15,17,1,2 +K03455 4442 . AG GA . . AS_SB_TABLE=13,15|3,4;DP=35;ECNT=19;ECNTH=6;MBQ=39,33;MFRL=297,209;MMQ=60,60;MPOS=27;POPAF=7.30;TLOD=21.88 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:28,7:0.235:35:11,1:13,5:25,7:13,15,3,4 +K03455 4443 . G A . . AS_SB_TABLE=3,5|11,11;DP=35;ECNT=19;ECNTH=9;MBQ=38,38;MFRL=258,297;MMQ=60,60;MPOS=38;POPAF=7.30;TLOD=80.00 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:8,22:0.726:30:3,9:3,8:7,20:3,5,11,11 +K03455 4448 . C A . . AS_SB_TABLE=14,17|1,2;DP=34;ECNT=19;ECNTH=9;MBQ=38,20;MFRL=290,126;MMQ=60,60;MPOS=25;POPAF=7.30;TLOD=9.60 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:31,3:0.091:34:10,0:16,1:29,2:14,17,1,2 +K03455 4449 . C T . . AS_SB_TABLE=6,7|9,10;DP=32;ECNT=19;ECNTH=9;MBQ=31,39;MFRL=206,323;MMQ=60,60;MPOS=42;POPAF=7.30;TLOD=74.99 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:13,19:0.617:32:4,7:6,10:11,18:6,7,9,10 +K03455 4460 . T C . . AS_SB_TABLE=15,14|0,2;DP=31;ECNT=19;ECNTH=7;MBQ=37,38;MFRL=290,312;MMQ=60,60;MPOS=40;POPAF=7.30;TLOD=4.96 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:29,2:0.100:31:9,0:14,2:26,2:15,14,0,2 +K03455 4465 . T TGGCC . . AS_SB_TABLE=13,12|2,3;DP=30;ECNT=19;ECNTH=8;MBQ=37,28;MFRL=290,229;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=13.23 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:25,5:0.148:30:8,2:14,1:23,4:0|1:4465_T_TGGCC:4465:13,12,2,3 +K03455 4466 . A AGTG . . AS_SB_TABLE=12,12|2,3;DP=30;ECNT=19;ECNTH=8;MBQ=38,29;MFRL=307,229;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=13.49 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:24,5:0.153:29:7,2:13,1:22,4:0|1:4465_T_TGGCC:4465:12,12,2,3 +K03455 4478 . T C . . AS_SB_TABLE=11,9|3,2;DP=25;ECNT=19;ECNTH=8;MBQ=38,20;MFRL=323,207;MMQ=60,60;MPOS=57;POPAF=7.30;TLOD=17.41 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:20,5:0.200:25:6,3:13,1:19,4:11,9,3,2 +K03455 4505 . A G . . AS_SB_TABLE=2,1|10,4;DP=17;ECNT=19;ECNTH=9;MBQ=39,38;MFRL=394,329;MMQ=60,60;MPOS=38;POPAF=7.30;TLOD=58.83 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:3,14:0.789:17:2,5:1,8:3,14:2,1,10,4 +K03455 4508 . A T . . AS_SB_TABLE=2,2|10,3;DP=17;ECNT=19;ECNTH=9;MBQ=39,35;MFRL=341,335;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=53.87 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:4,13:0.737:17:2,5:2,8:4,13:2,2,10,3 +K03455 4511 . G A . . AS_SB_TABLE=2,1|10,4;DP=17;ECNT=19;ECNTH=9;MBQ=37,36;MFRL=394,329;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=58.91 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:3,14:0.789:17:2,4:1,7:3,14:2,1,10,4 +K03455 4526 . T C . . AS_SB_TABLE=0,0|11,2;DP=13;ECNT=19;ECNTH=9;MBQ=0,36;MFRL=0,323;MMQ=60,60;MPOS=28;POPAF=7.30;TLOD=56.96 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:0,13:0.933:13:0,7:0,6:0,13:0,0,11,2 +K03455 4528 . T TCA . . AS_SB_TABLE=10,1|1,1;DP=13;ECNT=19;ECNTH=7;MBQ=38,37;MFRL=323,421;MMQ=60,60;MPOS=38;POPAF=7.30;TLOD=5.76 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:11,2:0.200:13:5,1:4,1:11,2:0|1:4528_T_TCA:4528:10,1,1,1 +K03455 4530 . CTT C . . AS_SB_TABLE=9,1|1,1;DP=13;ECNT=19;ECNTH=7;MBQ=35,38;MFRL=323,421;MMQ=60,60;MPOS=34;POPAF=7.30;RPA=4,2;RU=T;STR;TLOD=6.12 GT:AD:AF:DP:F1R2:F2R1:FAD:PGT:PID:PS:SB 0|1:10,2:0.213:12:5,1:4,1:10,2:0|1:4528_T_TCA:4528:9,1,1,1 +K03455 4532 . T C . . AS_SB_TABLE=0,0|11,0;DP=13;ECNT=19;ECNTH=9;MBQ=0,27;MFRL=0,323;MMQ=60,60;MPOS=21;POPAF=7.30;TLOD=39.42 GT:AD:AF:DP:F1R2:F2R1:FAD:SB 0/1:0,11:0.926:11:0,6:0,2:0,11:0,0,11,0