Mercurial > repos > iuc > gatk4_mutect2

annotate test-data/split_interval.interval_list @ 8:55e8a08e39e1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gatk4 commit 30797e29f13902f17652cf35585e52b363c28a31
author iuc
date Tue, 03 Feb 2026 18:50:29 +0000
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55e8a08e39e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gatk4 commit 30797e29f13902f17652cf35585e52b363c28a31
iuc
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1 @HD VN:1.6 SO:coordinate
55e8a08e39e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gatk4 commit 30797e29f13902f17652cf35585e52b363c28a31
iuc
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2 @SQ SN:chr22 LN:40001 M5:1922b52e1af6977302717072ebaca0a1 UR:file:/sfs/7/workspace/ws/iizha01-dsl2_testdata_human-0/tmp/nxf.DB5Cm4sZ5K/chr22_region.fasta
55e8a08e39e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gatk4 commit 30797e29f13902f17652cf35585e52b363c28a31
iuc
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3 @PG ID:1 CL:IntervalListTools --INPUT genome.interval_list --OUTPUT genome_split --UNIQUE true --SORT true --SCATTER_COUNT 25 --SUBDIVISION_MODE BALANCING_WITHOUT_INTERVAL_SUBDIVISION_WITH_OVERFLOW --TMP_DIR . --PADDING 0 --DONT_MERGE_ABUTTING false --ACTION CONCAT --INCLUDE_FILTERED false --BREAK_BANDS_AT_MULTIPLES_OF 0 --INVERT false --OUTPUT_VALUE NONE --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false PN:IntervalListTools
55e8a08e39e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gatk4 commit 30797e29f13902f17652cf35585e52b363c28a31
iuc
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diff changeset
4 chr22 18725 20784 + .
55e8a08e39e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gatk4 commit 30797e29f13902f17652cf35585e52b363c28a31
iuc
parents:
diff changeset
5 chr22 20869 20949 + .
55e8a08e39e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gatk4 commit 30797e29f13902f17652cf35585e52b363c28a31
iuc
parents:
diff changeset
6 chr22 23063 23459 + .