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diff macros.xml @ 12:6292d4ff1ddd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp commit 78e6d7efcb74d3baa4e5611a7be4ad82b51bfe0d
author iuc
date Tue, 15 Oct 2024 11:45:05 +0000
parents d5ae828d1c3c
children 2d605e86b5d7
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line diff
--- a/macros.xml	Tue Aug 13 12:18:28 2024 +0000
+++ b/macros.xml	Tue Oct 15 11:45:05 2024 +0000
@@ -43,12 +43,25 @@
         </param>
     </xml>
 
+    <xml name="merge_reads">
+        <conditional name="merge_reads">
+            <param argument="--merge" type="select" label="Merge forward and revese reads?">
+                    <option value="">No</option>
+                    <option value="--merge">Yes</option>
+            </param>
+            <when value="--merge">
+                <param argument="--include_unmerged" type="boolean" truevalue="--include_unmerged" falsevalue="" checked="false" label="Include unmerged outputs into merged output file" />
+            </when>
+            <when value="" />
+        </conditional>
+    </xml>
+
     <xml name="detect_adapter_for_pe">
         <param argument="--detect_adapter_for_pe" type="boolean" truevalue="--detect_adapter_for_pe" falsevalue="" checked="false" label="Adapter sequence auto-detection for paired-end" />
     </xml>
 
     <xml name="in" token_read_number="1" token_argument="-i">
-        <param name="in@READ_NUMBER@" argument="@ARGUMENT@" type="data" format="fastq,fastq.gz" label="Input @READ_NUMBER@" help="Input FASTQ file #@READ_NUMBER@"/>
+        <param name="in@READ_NUMBER@" argument="@ARGUMENT@" type="data" format="fastqsanger,fastqsanger.gz,fastqillumina,fastqillumina.gz" label="Input @READ_NUMBER@" help="Input FASTQ file #@READ_NUMBER@"/>
     </xml>
 
     <xml name="poly_g_min_len">