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comparison macros.xml @ 12:6292d4ff1ddd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp commit 78e6d7efcb74d3baa4e5611a7be4ad82b51bfe0d
author iuc
date Tue, 15 Oct 2024 11:45:05 +0000
parents d5ae828d1c3c
children 2d605e86b5d7
comparison
equal deleted inserted replaced
11:d5ae828d1c3c 12:6292d4ff1ddd
41 </valid> 41 </valid>
42 </sanitizer> 42 </sanitizer>
43 </param> 43 </param>
44 </xml> 44 </xml>
45 45
46 <xml name="merge_reads">
47 <conditional name="merge_reads">
48 <param argument="--merge" type="select" label="Merge forward and revese reads?">
49 <option value="">No</option>
50 <option value="--merge">Yes</option>
51 </param>
52 <when value="--merge">
53 <param argument="--include_unmerged" type="boolean" truevalue="--include_unmerged" falsevalue="" checked="false" label="Include unmerged outputs into merged output file" />
54 </when>
55 <when value="" />
56 </conditional>
57 </xml>
58
46 <xml name="detect_adapter_for_pe"> 59 <xml name="detect_adapter_for_pe">
47 <param argument="--detect_adapter_for_pe" type="boolean" truevalue="--detect_adapter_for_pe" falsevalue="" checked="false" label="Adapter sequence auto-detection for paired-end" /> 60 <param argument="--detect_adapter_for_pe" type="boolean" truevalue="--detect_adapter_for_pe" falsevalue="" checked="false" label="Adapter sequence auto-detection for paired-end" />
48 </xml> 61 </xml>
49 62
50 <xml name="in" token_read_number="1" token_argument="-i"> 63 <xml name="in" token_read_number="1" token_argument="-i">
51 <param name="in@READ_NUMBER@" argument="@ARGUMENT@" type="data" format="fastq,fastq.gz" label="Input @READ_NUMBER@" help="Input FASTQ file #@READ_NUMBER@"/> 64 <param name="in@READ_NUMBER@" argument="@ARGUMENT@" type="data" format="fastqsanger,fastqsanger.gz,fastqillumina,fastqillumina.gz" label="Input @READ_NUMBER@" help="Input FASTQ file #@READ_NUMBER@"/>
52 </xml> 65 </xml>
53 66
54 <xml name="poly_g_min_len"> 67 <xml name="poly_g_min_len">
55 <param argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length" 68 <param argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length"
56 help="The minimum length to detect polyG in the read tail. 10 by default."/> 69 help="The minimum length to detect polyG in the read tail. 10 by default."/>