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comparison disco.xml @ 3:b6d2f5be3f88 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author iuc
date Tue, 31 Aug 2021 08:02:33 +0000
parents 56b0772e3379
children
comparison
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2:56b0772e3379 3:b6d2f5be3f88
1 <tool id="disco" name="DISCO" version="@WRAPPER_VERSION@.1" profile="20.01"> 1 <tool id="disco" name="DISCO" version="@WRAPPER_VERSION@.1" profile="20.01">
2 <description>to assemble metagenomics data using an overlap-layout-consensus (OLC) approach</description> 2 <description>to assemble metagenomics data using an overlap-layout-consensus (OLC) approach</description>
3 <xrefs>
4 <xref type="bio.tools">disco</xref>
5 </xrefs>
3 <macros> 6 <macros>
4 <token name="@WRAPPER_VERSION@">1.2</token> 7 <token name="@WRAPPER_VERSION@">1.2</token>
5 <xml name="assembly_params"> 8 <xml name="assembly_params">
6 <param argument="minSequenceLengthTobePrinted" type="integer" value="1000" min="0" label="Minimum length of contigs or scaffolds to be printed"/> 9 <param argument="minSequenceLengthTobePrinted" type="integer" value="1000" min="0" label="Minimum length of contigs or scaffolds to be printed"/>
7 <param argument="MinOverlap4SimplifyGraph" type="integer" value="30" min="0" label="Minimum overlap length (bp) required to keep an edge between two reads during graph simplification" help="This minimum overlap length must be equal to 30 or larger than the MinOverlap4BuildGraph above. This allows you to try different minimum overlap lengths for assembly without redoing assembly graph construction. Edges with shorter overlap length than this parameter will be ignored during graph simplification. Increase this to reduce N50 and mis-assemblies"/> 10 <param argument="MinOverlap4SimplifyGraph" type="integer" value="30" min="0" label="Minimum overlap length (bp) required to keep an edge between two reads during graph simplification" help="This minimum overlap length must be equal to 30 or larger than the MinOverlap4BuildGraph above. This allows you to try different minimum overlap lengths for assembly without redoing assembly graph construction. Edges with shorter overlap length than this parameter will be ignored during graph simplification. Increase this to reduce N50 and mis-assemblies"/>