Mercurial > repos > iuc > data_manager_star_index_builder

annotate data_manager_conf.xml @ 12:66a8edd52132 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
author iuc
date Thu, 05 Dec 2024 06:47:38 +0000
parents c6f957c373d3
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
parents:
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1 <?xml version="1.0"?>
cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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2 <data_managers>
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c6f957c373d3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
iuc
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3 <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder">
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5750f6d0d369 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit a8e319862d723654c372a6d71e5de76e052586a9"
iuc
parents: 8
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4 <data_table name="rnastar_index2x_versioned">
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cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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5 <output>
cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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6 <column name="value" />
cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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7 <column name="dbkey" />
cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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8 <column name="name" />
cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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9 <column name="path" output_ref="out_file" >
cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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10 <move type="directory" relativize_symlinks="True">
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c5f5ec715548 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents: 0
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11 <!-- <source>${path}</source>
c5f5ec715548 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents: 0
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12 out_file.extra_files_path is used as base by default
c5f5ec715548 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents: 0
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13 if no source, eg for type=directory, then refers to base
c5f5ec715548 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents: 0
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14 -->
12
66a8edd52132 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
iuc
parents: 11
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15 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/rnastar_index/v${version}/${value}</target>
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cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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16 </move>
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66a8edd52132 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
iuc
parents: 11
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17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/rnastar_index/v${version}/${value}</value_translation>
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cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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18 <value_translation type="function">abspath</value_translation>
cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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19 </column>
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54cddd903437 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit b3b5e4587d85ab790b78a35d851f57f34627dc0b
iuc
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20 <column name="with_gene_model" />
54cddd903437 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit b3b5e4587d85ab790b78a35d851f57f34627dc0b
iuc
parents: 3
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21 <column name="version" />
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cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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22 </output>
cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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23 </data_table>
cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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24 </data_manager>
cc25c735cae1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c
iuc
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25 </data_managers>