Mercurial > repos > iuc > data_manager_mmseqs2_database

annotate tool-data/mmseqs2_databases.loc.sample @ 0:44eb7e1f0b36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
author iuc
date Thu, 27 Mar 2025 16:41:48 +0000
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44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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1 #This is a sample file distributed with Galaxy that enables tools
44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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2 #to use a directory of metagenomics files.
44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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3 #file has this format (white space characters are TAB characters)
44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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4 # Tab separated with 6 columns:
44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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5 # value : unique value used to generate the database path
44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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6 # name: name of the database generate using the date and version of the mmseqs2 databases
44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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7 # type : type of the database (aminoacid, nucleotide...)
44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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8 # taxonomy : whether or not the database should contain taxonomy information
44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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9 # path : final path to mmseqs2 databases on galaxy
44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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10 # version : tool version to filter database version depending of the tool
44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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11 # value, name, type, taxonomy, path, version
44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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12 # eg.
44eb7e1f0b36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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13 #SILVA-15.6f452-10022025 SILVA 10022025 nucleotide yes /path/to/data 15.6f452