Mercurial > repos > iuc > data_manager_malt_index_builder
diff tool-data/malt_indices.loc.sample @ 0:a0865793c152 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
| author | iuc |
|---|---|
| date | Wed, 17 Nov 2021 08:22:26 +0000 |
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| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/malt_indices.loc.sample Wed Nov 17 08:22:26 2021 +0000 @@ -0,0 +1,23 @@ +# This is a sample file distributed with Galaxy that enables tools +# to use a directory of MALT indexed data files. The malt_index.loc +# file has this format (longer white space characters are TAB characters): +# +# <unique_build_id> <dbkey> <display_name> <directory_path> +# +# So, for example, if you have the phiX indexe stored in +# /depot/data2/galaxy/phiX/base/, +# then the malt_index.loc entry would look like this: +# +# phiX174 phiX phiX Pretty /depot/data2/galaxy/phiX/base +# +# and your /depot/data2/galaxy/phiX/base/ directory +# would contain MALT index files for phiX174, sommething like this: +# +# -rw-r----- 1 galaxy galaxy 69 Oct 15 09:51 index0.idx +# -rw-r----- 1 galaxy galaxy 5442 Oct 15 09:51 ref.db +# -rw-r----- 1 galaxy galaxy 8 Oct 15 09:51 ref.idx +# -rw-r----- 1 galaxy galaxy 25 Oct 15 09:51 ref.inf +# -rw-r----- 1 galaxy galaxy 24952 Oct 15 09:51 table0.db +# -rw-r----- 1 galaxy galaxy 65536 Oct 15 09:51 table0.idx +# +phiX174 NC_001422 Coliphage phiX174 /depot/data2/galaxy/tool-data/malt_index/phiX174