Mercurial > repos > iuc > data_manager_malt_index_builder
annotate tool-data/malt_indices.loc.sample @ 0:a0865793c152 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
| author | iuc |
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| date | Wed, 17 Nov 2021 08:22:26 +0000 |
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| rev | line source |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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1 # This is a sample file distributed with Galaxy that enables tools |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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2 # to use a directory of MALT indexed data files. The malt_index.loc |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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3 # file has this format (longer white space characters are TAB characters): |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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4 # |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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5 # <unique_build_id> <dbkey> <display_name> <directory_path> |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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6 # |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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7 # So, for example, if you have the phiX indexe stored in |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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8 # /depot/data2/galaxy/phiX/base/, |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
diff
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9 # then the malt_index.loc entry would look like this: |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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10 # |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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11 # phiX174 phiX phiX Pretty /depot/data2/galaxy/phiX/base |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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12 # |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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13 # and your /depot/data2/galaxy/phiX/base/ directory |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
diff
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14 # would contain MALT index files for phiX174, sommething like this: |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
diff
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15 # |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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16 # -rw-r----- 1 galaxy galaxy 69 Oct 15 09:51 index0.idx |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
diff
changeset
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17 # -rw-r----- 1 galaxy galaxy 5442 Oct 15 09:51 ref.db |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
diff
changeset
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18 # -rw-r----- 1 galaxy galaxy 8 Oct 15 09:51 ref.idx |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
diff
changeset
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19 # -rw-r----- 1 galaxy galaxy 25 Oct 15 09:51 ref.inf |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
diff
changeset
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20 # -rw-r----- 1 galaxy galaxy 24952 Oct 15 09:51 table0.db |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
diff
changeset
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21 # -rw-r----- 1 galaxy galaxy 65536 Oct 15 09:51 table0.idx |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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22 # |
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a0865793c152
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
iuc
parents:
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23 phiX174 NC_001422 Coliphage phiX174 /depot/data2/galaxy/tool-data/malt_index/phiX174 |