Mercurial > repos > iuc > data_manager_fetch_gene_annotation

view data_manager/gene_annotation_fetcher.xml @ 0:6b2ba2f88c2e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_gene_annotation/ commit 8652f36a3a3838dca989426961561e81432acf4f
author iuc
date Tue, 04 Apr 2017 17:50:05 -0400
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool id="gene_annotation_fetcher_data_manager" name="Gene Annotation Fetch" tool_type="manage_data" version="1.0.1">
    <description>gene annotation fetcher</description>
    <requirements>
        <requirement type="package" version="2.13.0">requests</requirement>
    </requirements>
    <command detect_errors="exit_code">
    <![CDATA[
        python '$__tool_directory__/data_manager.py' --out '${out_file}'
        #if $gene_annotation_url:
            --url '${gene_annotation_url}'
        #end if
        #if $database_name:
            --name '${database_name}'
        #end if
    ]]>
    </command>
    <inputs>
        <param name="database_name" type="text" optional="true" label="Name for this database" help="Enter a unique identifier, or leave blank for today's date" />
        <param name="gene_annotation_url" type="text" label="Enter URL for gene annotation files" />
    </inputs>
    <outputs>
        <data format="data_manager_json" name="out_file" />
    </outputs>
    <help>
    </help>
</tool>