Mercurial > repos > iuc > data_manager_fetch_gene_annotation
comparison data_manager/gene_annotation_fetcher.xml @ 0:6b2ba2f88c2e draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_gene_annotation/ commit 8652f36a3a3838dca989426961561e81432acf4f
| author | iuc |
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| date | Tue, 04 Apr 2017 17:50:05 -0400 |
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| -1:000000000000 | 0:6b2ba2f88c2e |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="gene_annotation_fetcher_data_manager" name="Gene Annotation Fetch" tool_type="manage_data" version="1.0.1"> | |
| 3 <description>gene annotation fetcher</description> | |
| 4 <requirements> | |
| 5 <requirement type="package" version="2.13.0">requests</requirement> | |
| 6 </requirements> | |
| 7 <command detect_errors="exit_code"> | |
| 8 <![CDATA[ | |
| 9 python '$__tool_directory__/data_manager.py' --out '${out_file}' | |
| 10 #if $gene_annotation_url: | |
| 11 --url '${gene_annotation_url}' | |
| 12 #end if | |
| 13 #if $database_name: | |
| 14 --name '${database_name}' | |
| 15 #end if | |
| 16 ]]> | |
| 17 </command> | |
| 18 <inputs> | |
| 19 <param name="database_name" type="text" optional="true" label="Name for this database" help="Enter a unique identifier, or leave blank for today's date" /> | |
| 20 <param name="gene_annotation_url" type="text" label="Enter URL for gene annotation files" /> | |
| 21 </inputs> | |
| 22 <outputs> | |
| 23 <data format="data_manager_json" name="out_file" /> | |
| 24 </outputs> | |
| 25 <help> | |
| 26 </help> | |
| 27 </tool> |