Mercurial > repos > iuc > data_manager_bwa_mem2_index_builder

annotate data_manager_conf.xml @ 0:dfc665171492 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
author iuc
date Mon, 30 Sep 2024 10:12:25 +0000
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children a96a36c08c5b
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dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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2 <data_managers>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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3 <data_manager tool_file="data_manager/bwa_mem2_index_builder.xml" id="bwa_mem2_index_builder">
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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4 <data_table name="bwa_mem2_indexes">
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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5 <output>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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6 <column name="value" />
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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7 <column name="dbkey" />
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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8 <column name="name" />
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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9 <column name="path" output_ref="out_file" >
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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10 <move type="directory" relativize_symlinks="True">
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bwa_mem2_index/${value}</target>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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13 </move>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bwa_mem2_index/${value}/${path}</value_translation>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
15 <value_translation type="function">abspath</value_translation>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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16 </column>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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17 </output>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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18 </data_table>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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19 </data_manager>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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20 </data_managers>