Mercurial > repos > iuc > data_manager_bowtie_index_builder

annotate data_manager_conf.xml @ 6:bee4e8729ce7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
author iuc
date Sun, 16 Apr 2023 08:26:06 +0000
parents ddd473181942
children a601bb53be5f
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
2 <data_managers>
6
bee4e8729ce7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
iuc
parents: 2
diff changeset
3 <data_manager tool_file="data_manager/bowtie_index_builder.xml" id="bowtie_index_builder">
0
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
4 <data_table name="bowtie_indexes">
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
5 <output>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
6 <column name="value" />
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
7 <column name="dbkey" />
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
8 <column name="name" />
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
9 <column name="path" output_ref="out_file" >
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
10 <move type="directory" relativize_symlinks="True">
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bowtie_index</target>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
13 </move>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie_index/${path}</value_translation>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
15 <value_translation type="function">abspath</value_translation>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
16 </column>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
17 </output>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
18 </data_table>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
19 </data_manager>
6
bee4e8729ce7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
iuc
parents: 2
diff changeset
20 <data_manager tool_file="data_manager/bowtie_color_space_index_builder.xml" id="bowtie_color_space_index_builder">
0
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
21 <data_table name="bowtie_indexes_color">
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
22 <output>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
23 <column name="value" />
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
24 <column name="dbkey" />
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
25 <column name="name" />
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
26 <column name="path" output_ref="out_file" >
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
27 <move type="directory" relativize_symlinks="True">
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
28 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
29 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bowtie_index/color</target> <!-- confirm this as preferred location -->
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
30 </move>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
31 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie_index/color/${path}</value_translation>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
32 <value_translation type="function">abspath</value_translation>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
33 </column>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
34 </output>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
35 </data_table>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
36 </data_manager>
ddd44c79a065 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
iuc
parents:
diff changeset
37 </data_managers>