Mercurial > repos > iuc > colibread_mapsembler2

diff mapsembler2.xml @ 1:9216689fe94b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 7e976e65d4630ce8b485efd1d50a168ba98276e6
author: iuc
date: Fri, 24 Nov 2017 12:46:15 -0500
parents: c90f5219b67a
children: 71d60a931e2f
--- a/mapsembler2.xml	Fri Oct 20 03:12:16 2017 -0400
+++ b/mapsembler2.xml	Fri Nov 24 12:46:15 2017 -0500
@@ -9,12 +9,12 @@
     </requirements>
     <command><![CDATA[
 
-        #set $starter_filename = str($s) + "." + $s.ext
+        #set $starter_filename = os.path.basename(str($s)) + "." + $s.ext
         ln -sf '${s}' '${starter_filename}' &&
 
         #set $samples = []
         #for $read in $r
-            #set $filename = str($read) + "." + $read.ext
+            #set $filename = os.path.basename(str($read)) + "." + $read.ext
             ln -sf '${read}' '${filename}' &&
             #silent $samples.append($filename)
         #end for