Mercurial > repos > iuc > colibread_mapsembler2

comparison mapsembler2.xml @ 1:9216689fe94b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 7e976e65d4630ce8b485efd1d50a168ba98276e6
author iuc
date Fri, 24 Nov 2017 12:46:15 -0500
parents c90f5219b67a
children 71d60a931e2f
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0:c90f5219b67a 1:9216689fe94b
7 <requirements> 7 <requirements>
8 <requirement type="package" version="2.2.4">mapsembler2</requirement> 8 <requirement type="package" version="2.2.4">mapsembler2</requirement>
9 </requirements> 9 </requirements>
10 <command><![CDATA[ 10 <command><![CDATA[
11 11
12 #set $starter_filename = str($s) + "." + $s.ext 12 #set $starter_filename = os.path.basename(str($s)) + "." + $s.ext
13 ln -sf '${s}' '${starter_filename}' && 13 ln -sf '${s}' '${starter_filename}' &&
14 14
15 #set $samples = [] 15 #set $samples = []
16 #for $read in $r 16 #for $read in $r
17 #set $filename = str($read) + "." + $read.ext 17 #set $filename = os.path.basename(str($read)) + "." + $read.ext
18 ln -sf '${read}' '${filename}' && 18 ln -sf '${read}' '${filename}' &&
19 #silent $samples.append($filename) 19 #silent $samples.append($filename)
20 #end for 20 #end for
21 21
22 run_mapsembler2_pipeline.sh 22 run_mapsembler2_pipeline.sh