Mercurial > repos > iuc > cnvkit_segment

changeset 2:d5b444c208dd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit 9d922676808c5f57e9c01b148eec6cc0a63c53e5
author iuc
date Fri, 13 Dec 2024 23:51:45 +0000
parents dce9f84abf16
children 4318a3068879
files macros.xml segment.xml
diffstat 2 files changed, 9 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Fri Sep 29 15:38:40 2023 +0000
+++ b/macros.xml	Fri Dec 13 23:51:45 2024 +0000
@@ -1,10 +1,10 @@
 <macros>
-    <token name="@VERSION_SUFFIX@">0.1</token>
-    <token name="@TOOL_VERSION@">0.9.10</token>
+    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@TOOL_VERSION@">0.9.11</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">cnvkit</requirement>
-            <requirement type="package" version="1.0.2">scikit-learn</requirement>
+            <requirement type="package" version="1.4.2">scikit-learn</requirement>
         </requirements>
     </xml>
     <xml name="reference_interface">
--- a/segment.xml	Fri Sep 29 15:38:40 2023 +0000
+++ b/segment.xml	Fri Dec 13 23:51:45 2024 +0000
@@ -64,10 +64,12 @@
     <tests>
         <test expect_num_outputs="1">
             <param name="filename" ftype="tabular" value="tumor.cnr" />
-            <param name="method" value="hmm" />
-            <param name="threshold" value="2" />
-            <param name="drop_outliers" value="2" />
-            <param name="drop_low_coverage" value="1" />
+            <section name="advanced_settings">
+                <param name="method" value="hmm" />
+                <param name="threshold" value="2" />
+                <param name="drop_outliers" value="2" />
+                <param name="drop_low_coverage" value="1" />
+            </section>
             <output name="out_sample_segment">
                 <assert_contents><has_text text="chromosome"/></assert_contents>
             </output>