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annotate macros.xml @ 0:875ba3871f3c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cherri commit f9348123725f421ddbdbd8d372d038da4880dbac
author iuc
date Fri, 09 Dec 2022 17:39:54 +0000
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children 5cc3b0e3178e
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875ba3871f3c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cherri commit f9348123725f421ddbdbd8d372d038da4880dbac
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1 <macros>
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2 <token name="@VERSION@">0.7</token>
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3 <token name="@PROFILE@">21.05</token>
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4 <xml name="requirements">
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5 <requirements>
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6 <requirement type="package" version="@VERSION@">cherri</requirement>
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7 </requirements>
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8 </xml>
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9 <macro name="reference_source_conditional">
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10 <conditional name="ref_source">
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11 <param name="ref_source_selector" type="select" label="Reference genome in FASTA format">
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12 <option value="cached">locally cached</option>
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13 <option value="history">in your history</option>
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14 </param>
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15 <when value="cached">
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16 <param name="genome_fasta" type="select" label="Select reference genome" help="If your genome of interest is not listed, contact the Galaxy team">
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17 <options from_data_table="all_fasta">
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18 <filter type="sort_by" column="2" />
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19 <validator type="no_options" message="No indices are available." />
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20 </options>
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21 </param>
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22 </when>
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23 <when value="history">
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24 <param name="genome_fasta" type="data" format="fasta" label="Select a reference dataset in FASTA format" />
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25 </when>
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26 </conditional>
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27 <param name="chrom_len_file" type="data" format="tabular" label="Two column tabular file containing chromosome lengths" help="Format: 'chrom name' \t 'chrom length'" />
875ba3871f3c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cherri commit f9348123725f421ddbdbd8d372d038da4880dbac
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28 </macro>
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29 <token name="@COMMONPARAMS@" ><![CDATA[
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30 #if $intarna_param_file:
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31 -p '$intarna_param_file'
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32 #end if
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33 -c '$context'
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34 -st $use_structure
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35 -t '$run_time'
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36 -me "\${GALAXY_MEMORY_MB_PER_SLOT:-8000}"
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37 -j "\${GALAXY_SLOTS:-1}"
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38 ]]></token>
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39 <xml name="edam_ontology">
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40 <edam_topics>
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41 <edam_topic>topic_0080</edam_topic>
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42 <edam_topic>topic_0081</edam_topic>
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43 <edam_topic>topic_0160</edam_topic>
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44 </edam_topics>
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45 <edam_operations>
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46 <edam_operation>operation_2995</edam_operation>
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47 </edam_operations>
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48 </xml>
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49 <xml name="bio_tools">
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50 <xrefs>
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51 <xref type="bio.tools">cherri</xref>
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52 </xrefs>
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53 </xml>
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54 <xml name="requirements">
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55 <requirements>
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56 <requirement type="package" version="@VERSION@">cherri</requirement>
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57 <yield/>
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58 </requirements>
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59 </xml>
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60 <xml name="citations">
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61 <citations>
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62 <yield />
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63 </citations>
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64 </xml>
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65 </macros>