Mercurial > repos > iuc > checkm2

changeset 1:62eaf755aff3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/main/tools/checkm2/ commit 043f6bb449b27287b413a937b21d918569cfdad7
author iuc
date Sun, 19 Jan 2025 18:48:07 +0000
parents 43afed10b792
children 33096c8893c3
files test-data/checkm2.loc tool-data/checkm2.loc.sample tool_data_table_conf.xml.sample tool_data_table_conf.xml.test
diffstat 4 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/test-data/checkm2.loc	Tue Jan 14 20:26:46 2025 +0000
+++ b/test-data/checkm2.loc	Sun Jan 19 18:48:07 2025 +0000
@@ -1,3 +1,3 @@
 ##Checkm2 versioned indexes
-#build_id	display_name	path	version
-001	test_db	1.0.2	${__HERE__}/Checkm2_database/uniref100.KO.1.dmnd
+#build_id   dbkey	display_name	path	version
+001 1.0.2	test_db	1.0.2	${__HERE__}/Checkm2_database/uniref100.KO.1.dmnd
--- a/tool-data/checkm2.loc.sample	Tue Jan 14 20:26:46 2025 +0000
+++ b/tool-data/checkm2.loc.sample	Sun Jan 19 18:48:07 2025 +0000
@@ -10,9 +10,9 @@
 #The checkm2_db_versioned.loc file has this format (longer white space
 #characters are TAB characters):
 #
-#<unique_build_id>	<display_name>	<version>	<file_base_path>
+#<unique_build_id>  <dbkey> <display_name>	<version>	<file_base_path>
 
 #The <version> column indicates the checkm2 version that generated the database
 
 #
-#diamond_db_1.0.2	Diamond database	1.0.2	/mnt/galaxyIndices/Checkm2_database/uniref100.KO.1.dmnd
+#diamond_db_1.0.2   1.0.2	Diamond database	1.0.2	/mnt/galaxyIndices/Checkm2_database/uniref100.KO.1.dmnd
--- a/tool_data_table_conf.xml.sample	Tue Jan 14 20:26:46 2025 +0000
+++ b/tool_data_table_conf.xml.sample	Sun Jan 19 18:48:07 2025 +0000
@@ -1,6 +1,6 @@
 <tables>
     <table name="checkm2" comment_char="#" allow_duplicate_entries="False">
-        <columns>value, name, version, path</columns>
+        <columns>value, dbkey, name, version, path</columns>
         <file path="tool-data/checkm2.loc" />
     </table>
 </tables>
\ No newline at end of file
--- a/tool_data_table_conf.xml.test	Tue Jan 14 20:26:46 2025 +0000
+++ b/tool_data_table_conf.xml.test	Sun Jan 19 18:48:07 2025 +0000
@@ -1,6 +1,6 @@
 <tables>
     <table name="checkm2" comment_char="#" allow_duplicate_entries="False">
-        <columns>value, name, version, path</columns>
+        <columns>value, dbkey, name, version, path</columns>
         <file path="${__HERE__}/test-data/checkm2.loc" />
     </table>
 </tables>
\ No newline at end of file