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annotate boxplot.r @ 0:b457cf9d24d7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
author iuc
date Fri, 09 Mar 2018 08:22:50 -0500
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children bfaa7f89c98d
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b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
diff changeset
1 wrapper <- function(table, columns, options) {
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
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diff changeset
2
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
diff changeset
3 # initialize output list
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
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4 l <- list()
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
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5
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
diff changeset
6 # loop through all columns
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
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7 for (key in names(columns)) {
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
diff changeset
8 # load column data
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
diff changeset
9 column <- as.numeric(columns[key])
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
diff changeset
10 column_data <- suppressWarnings(as.numeric(as.character(table[column][[1]])))
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
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11
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
diff changeset
12 # create hist data
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
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13 data <- boxplot(column_data, plot=FALSE)
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
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14
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
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15 # collect vectors in list
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
parents:
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16 l <- append(l, list(data$stats))
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
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17 }
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
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b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
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19 # return
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
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20 return (l)
b457cf9d24d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
iuc
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21 }