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annotate test-data/test2.log @ 7:39422d5f3aa5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
author iuc
date Fri, 26 Aug 2022 07:20:57 +0000
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children 58f60dc69d49
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7
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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1 PROGRAM START TIME: 08-05-2022 14:41:48
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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diff changeset
2 BRACKEN SUMMARY (Kraken report: /tmp/tmpy56dgetr/files/f/5/4/dataset_f5412c50-3888-4466-b041-32814cdda47c.dat)
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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diff changeset
3 >>> Threshold: 10
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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diff changeset
4 >>> Number of species in sample: 1
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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diff changeset
5 >> Number of species with reads > threshold: 1
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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diff changeset
6 >> Number of species with reads < threshold: 0
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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diff changeset
7 >>> Total reads in sample: 45
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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diff changeset
8 >> Total reads kept at species level (reads > threshold): 42
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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diff changeset
9 >> Total reads discarded (species reads < threshold): 0
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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10 >> Reads distributed: 1
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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11 >> Reads not distributed (eg. no species above threshold): 0
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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12 >> Unclassified reads: 2
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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13 BRACKEN OUTPUT PRODUCED: /tmp/tmpy56dgetr/job_working_directory/000/4/outputs/galaxy_dataset_e099cc44-07e6-4507-b11f-137722113078.dat
39422d5f3aa5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
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14 PROGRAM END TIME: 08-05-2022 14:41:48