Mercurial > repos > iuc > bedtools

diff nucBed.xml @ 58:ed6f66aed1f9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 29bd1be4655cd26052095a49a8e188d2572b703b"
author iuc
date Thu, 09 Sep 2021 13:02:16 +0000
parents 1d0a0d6a78b1
children 539958feb49c
line wrap: on
line diff
--- a/nucBed.xml	Wed Sep 01 11:02:26 2021 +0000
+++ b/nucBed.xml	Thu Sep 09 13:02:16 2021 +0000
@@ -7,6 +7,7 @@
     <expand macro="requirements" />
     <expand macro="stdio" />
     <command><![CDATA[
+ln -s '$fasta' 'input.fasta' &&
 bedtools nuc
 $s
 $seq
@@ -14,7 +15,7 @@
     -pattern '$pattern'
     $C
 #end if
--fi '$fasta'
+-fi 'input.fasta'
 -bed '$input'
 > '$output'
     ]]></command>