Mercurial > repos > iuc > bedtools

comparison nucBed.xml @ 58:ed6f66aed1f9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 29bd1be4655cd26052095a49a8e188d2572b703b"
author iuc
date Thu, 09 Sep 2021 13:02:16 +0000
parents 1d0a0d6a78b1
children 539958feb49c
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57:1d0a0d6a78b1 58:ed6f66aed1f9
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <expand macro="stdio" /> 8 <expand macro="stdio" />
9 <command><![CDATA[ 9 <command><![CDATA[
10 ln -s '$fasta' 'input.fasta' &&
10 bedtools nuc 11 bedtools nuc
11 $s 12 $s
12 $seq 13 $seq
13 #if str($pattern): 14 #if str($pattern):
14 -pattern '$pattern' 15 -pattern '$pattern'
15 $C 16 $C
16 #end if 17 #end if
17 -fi '$fasta' 18 -fi 'input.fasta'
18 -bed '$input' 19 -bed '$input'
19 > '$output' 20 > '$output'
20 ]]></command> 21 ]]></command>
21 <inputs> 22 <inputs>
22 <param name="input" argument="-bed" type="data" format="@STD_BEDTOOLS_INPUTS@" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/> 23 <param name="input" argument="-bed" type="data" format="@STD_BEDTOOLS_INPUTS@" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/>