Mercurial > repos > iuc > bedtools
annotate expandBed.xml @ 17:a2d4c30ba2f9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
| author | iuc |
|---|---|
| date | Sun, 21 Jun 2015 22:49:46 -0400 |
| parents | 0d3aa592ce27 |
| children | d279800f4ff9 |
| rev | line source |
|---|---|
| 8 | 1 <tool id="bedtools_expandbed" name="ExpandBed" version="@WRAPPER_VERSION@.0"> |
|
17
a2d4c30ba2f9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
iuc
parents:
8
diff
changeset
|
2 <description>replicate lines based on lists of values in columns</description> |
| 8 | 3 <macros> |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <expand macro="stdio" /> | |
| 8 <command> | |
| 9 <![CDATA[ | |
| 10 bedtools expand | |
| 11 -c "${cols}" | |
| 12 -i "${input}" | |
| 13 > "${output}" | |
| 14 ]]> | |
| 15 </command> | |
| 16 <inputs> | |
| 17 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/> | |
| 18 <expand macro="choose_columns" /> | |
| 19 </inputs> | |
| 20 <outputs> | |
| 21 <data name="output" metadata_source="input" format_source="input" /> | |
| 22 </outputs> | |
| 23 <tests> | |
| 24 <test> | |
| 25 <param name="input" value="expandBed1.bed" ftype="bed" /> | |
| 26 <param name="cols" value="5"/> | |
| 27 <output name="output" file="expandBed_result1.bed" ftype="bed" /> | |
| 28 </test> | |
| 29 <test> | |
| 30 <param name="input" value="expandBed1.bed" ftype="bed" /> | |
| 31 <param name="cols" value="4,5"/> | |
| 32 <output name="output" file="expandBed_result2.bed" ftype="bed" /> | |
| 33 </test> | |
| 34 </tests> | |
| 35 <help> | |
| 36 <![CDATA[ | |
| 37 **What it does** | |
| 38 | |
| 39 Replicate lines in a file based on columns of comma-separated values. | |
| 40 | |
| 41 @REFERENCES@ | |
| 42 ]]> | |
| 43 </help> | |
| 44 <expand macro="citations" /> | |
| 45 </tool> |