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1 <tool id="bedtools_expandbed" name="ExpandBed" version="@WRAPPER_VERSION@.0">
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2 <description></description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <expand macro="stdio" />
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8 <command>
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4
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9 <![CDATA[
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10 bedtools expand
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11 -c "${cols}"
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12 -i "${input}"
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13 > "${output}"
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14 ]]>
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15 </command>
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16 <inputs>
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4
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17 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/>
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18 <expand macro="choose_columns" />
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19 </inputs>
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20 <outputs>
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21 <data name="output" metadata_source="input" format_source="input" />
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22 </outputs>
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4
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23 <tests>
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24 <test>
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25 <param name="input" value="expandBed1.bed" ftype="bed" />
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26 <param name="cols" value="5"/>
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27 <output name="output" file="expandBed_result1.bed" ftype="bed" />
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28 </test>
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29 <test>
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30 <param name="input" value="expandBed1.bed" ftype="bed" />
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31 <param name="cols" value="4,5"/>
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32 <output name="output" file="expandBed_result2.bed" ftype="bed" />
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33 </test>
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34 </tests>
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35 <help>
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36 <![CDATA[
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37 **What it does**
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38
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39 Replicate lines in a file based on columns of comma-separated values.
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40
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41 @REFERENCES@
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4
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42 ]]>
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43 </help>
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44 <expand macro="citations" />
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45 </tool>
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