Mercurial > repos > iuc > bctools_convert_to_binary_barcode

diff convert_bc_to_binary_RY.xml @ 0:755873b63aa5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48
author: iuc
date: Tue, 14 Nov 2017 05:50:13 -0500
children: 53168bfa48c6
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/convert_bc_to_binary_RY.xml	Tue Nov 14 05:50:13 2017 -0500
@@ -0,0 +1,44 @@
+<tool id="bctools_convert_to_binary_barcode" name="Create binary barcodes" version="@VERSION@">
+    <description>from regular barcodes.</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <command detect_errors="exit_code"><![CDATA[
+        convert_bc_to_binary_RY.py
+        '$barcodes'
+        > '$barcodes_ry'
+    ]]></command>
+    <inputs>
+        <param name="barcodes" type="data" format="fastq" label="FASTQ file to convert"/>
+    </inputs>
+    <outputs>
+        <data name="barcodes_ry" format="fastq"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="barcodes" value="extracted_bcs.fastq"/>
+            <output name="barcodes_ry" file="converted_bcs.fastq"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+
+bctools - Create binary barcodes from regular barcodes
+======================================================
+
+This tool converts standard nucleotide codes to the IUPAC nucleotide codes used for binary barcodes.
+A and G are converted to nucleotide code R. T, U and C are converted to Y.
+
+Input
+-----
+
+The input for this tool is a FASTQ file.
+
+Output
+------
+
+This tool produces a single FASTQ file containing the converted barcodes.
+
+    ]]></help>
+    <expand macro="citations"/>
+</tool>