Mercurial > repos > iuc > bctools_convert_to_binary_barcode

comparison convert_bc_to_binary_RY.xml @ 0:755873b63aa5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48
author iuc
date Tue, 14 Nov 2017 05:50:13 -0500
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children 53168bfa48c6
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1 <tool id="bctools_convert_to_binary_barcode" name="Create binary barcodes" version="@VERSION@">
2 <description>from regular barcodes.</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements"/>
7 <command detect_errors="exit_code"><![CDATA[
8 convert_bc_to_binary_RY.py
9 '$barcodes'
10 > '$barcodes_ry'
11 ]]></command>
12 <inputs>
13 <param name="barcodes" type="data" format="fastq" label="FASTQ file to convert"/>
14 </inputs>
15 <outputs>
16 <data name="barcodes_ry" format="fastq"/>
17 </outputs>
18 <tests>
19 <test>
20 <param name="barcodes" value="extracted_bcs.fastq"/>
21 <output name="barcodes_ry" file="converted_bcs.fastq"/>
22 </test>
23 </tests>
24 <help><![CDATA[
25
26 bctools - Create binary barcodes from regular barcodes
27 ======================================================
28
29 This tool converts standard nucleotide codes to the IUPAC nucleotide codes used for binary barcodes.
30 A and G are converted to nucleotide code R. T, U and C are converted to Y.
31
32 Input
33 -----
34
35 The input for this tool is a FASTQ file.
36
37 Output
38 ------
39
40 This tool produces a single FASTQ file containing the converted barcodes.
41
42 ]]></help>
43 <expand macro="citations"/>
44 </tool>