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annotate tool-data/models.loc.sample @ 11:e40fa37c475b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
author iuc
date Fri, 21 Feb 2025 22:12:25 +0000
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children 5e21557b2f70
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e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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1 #Enter the model names in the second column, the platform name in the second and the path in the third.
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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2 #This file lists the locations and dbkeys of all the model files
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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3 #under the "models" directory (a directory that contains a directory
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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4 #for each build). This file has the format (white space characters are
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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5 #TAB characters):
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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6 #
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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7 #<id> <name> <platform> <path>
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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8 #
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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9 #So, all_model.loc could look something like this:
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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10 test_model "the_model_name" r941_prom_hac_g360+g422 $(dirname $(which run_clair3.sh))/models/r941_prom_hac_g360+g422#This file lists the names and locations of all the clair3 model files
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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11 #under the "clair3_models" directory (a directory that contains a directory
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
parents:
diff changeset
12 #for each build). This file has the format (white space characters are
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
parents:
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13 #TAB characters):
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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14 #
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
parents:
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15 #<unique_name> <platform> <sha256sum> <file_path> <source>
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
parents:
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16 #
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
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17 #So, clair3_models.loc could look something like this:
e40fa37c475b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 20c6e3148d4adadc818754e77312cb11eb7af61e
iuc
parents:
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18 test_model ont $(dirname $(which run_clair3.sh))/models/r941_prom_hac_g360+g422 clair3